Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_J01
(375 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK094707-1|BAC04403.1| 157|Homo sapiens protein ( Homo sapiens ... 29 4.9
AF205888-1|AAF22799.1| 777|Homo sapiens AXIN2 protein. 29 4.9
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 29 4.9
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 29 4.9
AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein. 29 4.9
AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein. 29 4.9
BC007770-1|AAH07770.1| 452|Homo sapiens golgi reassembly stacki... 28 8.6
AK027349-1|BAB55054.1| 452|Homo sapiens protein ( Homo sapiens ... 28 8.6
AK023201-1|BAB14459.1| 452|Homo sapiens protein ( Homo sapiens ... 28 8.6
AK023082-1|BAB14395.1| 452|Homo sapiens protein ( Homo sapiens ... 28 8.6
AC010092-2|AAY15076.1| 452|Homo sapiens unknown protein. 28 8.6
>AK094707-1|BAC04403.1| 157|Homo sapiens protein ( Homo sapiens
cDNA FLJ37388 fis, clone BRAMY2026713. ).
Length = 157
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = -3
Query: 322 PVPLPAVAAPSFCLLVKSKEPIALTIFLS----LPAKGTLTPA-PEVPSELSVRAPCASL 158
P P P+++ SFCLL + +FL LPA G + P + LS+ P A L
Sbjct: 43 PFPHPSISGVSFCLLFPPSGLKSPDLFLKCSRLLPASGPWAQSIPSPRTTLSLLTPPARL 102
Query: 157 RT 152
R+
Sbjct: 103 RS 104
>AF205888-1|AAF22799.1| 777|Homo sapiens AXIN2 protein.
Length = 777
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 22 CSGRSSFYCLSLCASAFKADT*LSANLFTIFNTMRSLNY*QALESAGTR 168
C G S +YC S C S KA + + F +T ++ A S G R
Sbjct: 542 CPGGSEYYCYSKCKSHSKAPETMPSEQFGAQSTKKAYPLESARSSPGER 590
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 217 LTPAPEVPSELSVRAPCASLRTL 149
+TP P PS LS P SLRTL
Sbjct: 364 VTPTPVTPSSLSTDIPTTSLRTL 386
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 217 LTPAPEVPSELSVRAPCASLRTL 149
+TP P PS LS P SLRTL
Sbjct: 364 VTPTPVTPSSLSTDIPTTSLRTL 386
>AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein.
Length = 877
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 217 LTPAPEVPSELSVRAPCASLRTL 149
+TP P PS LS P SLRTL
Sbjct: 24 VTPTPVTPSSLSTDIPTTSLRTL 46
>AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 217 LTPAPEVPSELSVRAPCASLRTL 149
+TP P PS LS P SLRTL
Sbjct: 24 VTPTPVTPSSLSTDIPTTSLRTL 46
>BC007770-1|AAH07770.1| 452|Homo sapiens golgi reassembly stacking
protein 2, 55kDa protein.
Length = 452
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 322 PVPLPAVAAPSFCLLVKSKEPIAL-TIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTLE 146
P+PLP+ PSF L+ +S + + SLP AP P+ + +A AS T++
Sbjct: 357 PLPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSN---APSDPATTTAKADAASSLTVD 413
Query: 145 L 143
+
Sbjct: 414 V 414
>AK027349-1|BAB55054.1| 452|Homo sapiens protein ( Homo sapiens
cDNA FLJ14443 fis, clone HEMBB1001151, moderately
similar to Rattus norvegicus golgi stacking protein
homolog GRASP55 mRNA. ).
Length = 452
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 322 PVPLPAVAAPSFCLLVKSKEPIAL-TIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTLE 146
P+PLP+ PSF L+ +S + + SLP AP P+ + +A AS T++
Sbjct: 357 PLPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSN---APSDPATTTAKADAASSLTVD 413
Query: 145 L 143
+
Sbjct: 414 V 414
>AK023201-1|BAB14459.1| 452|Homo sapiens protein ( Homo sapiens
cDNA FLJ13139 fis, clone NT2RP3003203, moderately
similar to Rattus norvegicus golgi stacking protein
homolog GRASP55 mRNA. ).
Length = 452
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 322 PVPLPAVAAPSFCLLVKSKEPIAL-TIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTLE 146
P+PLP+ PSF L+ +S + + SLP AP P+ + +A AS T++
Sbjct: 357 PLPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSN---APSDPATTTAKADAASSLTVD 413
Query: 145 L 143
+
Sbjct: 414 V 414
>AK023082-1|BAB14395.1| 452|Homo sapiens protein ( Homo sapiens
cDNA FLJ13020 fis, clone NT2RP3000739, weakly similar to
ATROPHIN-1. ).
Length = 452
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 322 PVPLPAVAAPSFCLLVKSKEPIAL-TIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTLE 146
P+PLP+ PSF L+ +S + + SLP AP P+ + +A AS T++
Sbjct: 357 PLPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSN---APSDPATTTAKADAASSLTVD 413
Query: 145 L 143
+
Sbjct: 414 V 414
>AC010092-2|AAY15076.1| 452|Homo sapiens unknown protein.
Length = 452
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 322 PVPLPAVAAPSFCLLVKSKEPIAL-TIFLSLPAKGTLTPAPEVPSELSVRAPCASLRTLE 146
P+PLP+ PSF L+ +S + + SLP AP P+ + +A AS T++
Sbjct: 357 PLPLPSEFLPSFPLVPESSSAASSGELLSSLPPTSN---APSDPATTTAKADAASSLTVD 413
Query: 145 L 143
+
Sbjct: 414 V 414
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,806,655
Number of Sequences: 237096
Number of extensions: 1012558
Number of successful extensions: 2448
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2448
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2479134298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -