Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I24
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233... 31 0.22
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 0.89
05_05_0100 + 22388457-22388561,22388657-22388808,22388897-223892... 29 0.89
05_05_0099 - 22381586-22382604,22382683-22383056,22383145-223832... 29 0.89
03_05_0280 - 22671786-22672208 29 0.89
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 28 1.2
01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362... 27 2.7
01_06_1124 - 34679205-34680926,34681438-34682811 27 3.6
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 26 4.7
06_01_0497 + 3555919-3557154,3557815-3558143,3558177-3558775,355... 25 8.3
>10_01_0216 -
2329413-2330419,2331382-2331537,2332363-2332897,
2333026-2333514
Length = 728
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 12 FTSIHTIHSTERRPLLEIGLPKDRRPFLCNLHLMGWGGGLLIYIKSLKSEITVTDKGEG 188
F SIH + +R P +P+D+ CN ++G G ++ ++EITV D G
Sbjct: 84 FRSIHD--APDRIPPEHFLMPRDKGAGRCNWDVLGCRHGRVLVYNRTRNEITVWDPATG 140
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 28.7 bits (61), Expect = 0.89
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 42 ERRPLLEIGLPKDRRPFLCNLHLMGWGGGLLIYIKSLKSEITVTDKGEGGV*QYLRCC-L 218
E+ L G P + + H G L + +KSL ++T++ K +G + + RC
Sbjct: 740 EKHSCLSCGEPPEAHMYSYTHH----NGTLTVLVKSLPLDVTLSGKDQGRIWMWTRCLRC 795
Query: 219 RYTPNRRPVNND*GRELT 272
P +R + + R L+
Sbjct: 796 NGKPTQRVIISSSARNLS 813
>05_05_0100 +
22388457-22388561,22388657-22388808,22388897-22389270,
22389349-22390367
Length = 549
Score = 28.7 bits (61), Expect = 0.89
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 17 FHPYNPFN*TTTTAGNRSPQRSTTVLM*SAPYG 115
++P NPFN T T N + T VL+ PYG
Sbjct: 427 YYPLNPFNYTGTPPNNTNVMNGTKVLV--LPYG 457
>05_05_0099 -
22381586-22382604,22382683-22383056,22383145-22383296,
22383392-22383496
Length = 549
Score = 28.7 bits (61), Expect = 0.89
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 17 FHPYNPFN*TTTTAGNRSPQRSTTVLM*SAPYG 115
++P NPFN T T N + T VL+ PYG
Sbjct: 427 YYPLNPFNYTGTPPNNTNVMNGTKVLV--LPYG 457
>03_05_0280 - 22671786-22672208
Length = 140
Score = 28.7 bits (61), Expect = 0.89
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 24 HTIHSTERRPLLEIGLPKDRRPFLCNL 104
H +H + R P LEIG P+ P L L
Sbjct: 87 HRVHDSRRFPSLEIGTPEPEEPCLVAL 113
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 42 ERRPLLEIGLPKDRRPFLCNLHLMGWGGGLLIYIKSLKSEITVTDKGEGGV*QYLRCC-L 218
E+ L G P + + H G L + +KSL ++T++ K +G + + RC
Sbjct: 785 EKHNCLSCGEPPEAHMYSYTHH----NGTLTVLVKSLPLDVTLSGKDQGRIWMWTRCLRC 840
Query: 219 RYTPNRRPVNND*GRELT 272
P +R + + R L+
Sbjct: 841 NGKPTQRVIISSSARNLS 858
>01_04_0019 -
15134494-15135863,15135966-15136083,15136226-15136278,
15136293-15137271,15138980-15139054
Length = 864
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 67 VSPKIDDRSYVICTLWGGVGGYLSILNHSSRKLL*LTRGRVE 192
V+ IDDRS+V+ W + + + HS+ LT G VE
Sbjct: 208 VADVIDDRSFVLAAGWAVLSSFSGLQVHSTA----LTSGEVE 245
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 164 YCN*QGGGWSITISKMLLTLYPKPEAR*QRLRTGIDEITRRRLPS 298
YC +G W + + L+ LY K + LR + + RR L S
Sbjct: 246 YCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVS 290
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = +3
Query: 117 WGG--GLLIYIKSLKSEITVTDKGEGGV*QYLRCCLRYTPNRRP 242
W G G K L + ++ D ++LRCC R P RP
Sbjct: 678 WSGLEGPAAMFKVLHKDPSIPDSLSPEGKEFLRCCFRRNPAERP 721
>06_01_0497 +
3555919-3557154,3557815-3558143,3558177-3558775,
3558919-3560393
Length = 1212
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 114 GWGGGLLIYIKSLKSEITVTDKGEGGV*QYLRCCLRY 224
G G GLL+ +S + E +GE G +RC L +
Sbjct: 542 GGGAGLLLSWRSRRREEETARRGESGGRGAVRCALGF 578
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,793,572
Number of Sequences: 37544
Number of extensions: 211203
Number of successful extensions: 350
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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