Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I23
         (258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   0.95 
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   1.3  
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    25   1.3  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   1.7  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    23   5.1  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    23   5.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   5.1  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    23   6.7  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    23   8.9  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    23   8.9  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 100  SLCSALFSPVKLFYSFKKHFYHVMY 174
            SL   L + V   Y FKK FYHV +
Sbjct: 1075 SLIVPLLTGVLAVYIFKKKFYHVKF 1099


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 94  PHSLCSALFSPVKLFYSFKKHFYHVMYFVENK 189
           PH  CS     +K +YS K    +V  + EN+
Sbjct: 209 PHQRCSFYAQVIKTWYSDKNFTLYVTDYTENE 240


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -3

Query: 181 QQNTLHDKNVF*RNKTISLERIKRSIMNEVRSGDQEGRCLAQYKRE 44
           QQN + + N    N+  + +R+K+ +       D     L+ Y+R+
Sbjct: 258 QQNVIEENNESSDNEYATFDRVKKDLFASDEEDDVSADQLSSYERD 303


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  NQHHHEAPFPACIVQGTAPPGLHFVPH 99
           + H H A  PA +   +APPG  FVP+
Sbjct: 321 SSHPHMAFLPATVPTHSAPPG--FVPY 345


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 118 FSPVKLFYSFKKHFYHVMYFVENKY 192
           F+ + L  +F +H++ VM F+E  +
Sbjct: 344 FTGLDLEMAFNEHYHEVMEFIEKLF 368


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 145 RNKTISLERIKRSIMNEV 92
           + K + LE +KR IMN V
Sbjct: 508 KEKNLELENLKRKIMNAV 525


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 175  NTLHDKNVF*RNKTISL 125
            N L+DKN+  RN+++SL
Sbjct: 1115 NLLNDKNIVVRNQSLSL 1131


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 112 RSIMNEVRSGDQEGRCLAQYKREMELHD 29
           R IMN  R+G  EG C   ++   +  D
Sbjct: 112 RVIMNYDRAGRSEGSCDVYFETSQDAED 139


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 57  CARHRPSWSPLRTSFIMLRFILSSE 131
           C+R +P+W   R ++I  +   +SE
Sbjct: 260 CSRQKPTWFKARKAYIRSQSTETSE 284


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/39 (25%), Positives = 26/39 (66%)
 Frame = -3

Query: 145 RNKTISLERIKRSIMNEVRSGDQEGRCLAQYKREMELHD 29
           RN+  +  R ++ ++NE+R+  Q+ +   ++ R+ME+++
Sbjct: 652 RNRLHASYRQQQLLLNEMRNVTQKLKQNPEFLRKMEVYN 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,003,061
Number of Sequences: 5004
Number of extensions: 18183
Number of successful extensions: 46
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)