Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I22
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 29 0.46
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar... 28 0.80
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 28 1.1
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 1.4
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 27 1.4
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 4.3
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 26 4.3
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 4.3
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 5.7
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 25 9.9
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 25 9.9
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 29.1 bits (62), Expect = 0.46
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 349 NSGKYDKLKNELVTRLSSSQEQRVRQLLTHEDIGDRKPSQFLRHLQSLAGPSVPDDFV 522
N K+DK K ++ + L++H ++ P++ H Q++ GPSV D+FV
Sbjct: 104 NLEKFDK-KQVFAEFREKDKKDPAKLLVSH----NKSPNRNYHHKQNVLGPSVKDEFV 156
>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 28.3 bits (60), Expect = 0.80
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 247 LANITSDMTKYNYVLANLDYKYVTEVKDIIKNPPNSGKYDKLKNELVTRLSSSQE 411
L + + Y L+Y+Y +++++IKNP Y + K ++ +R++ + E
Sbjct: 19 LVKTVKTLERLGYTAIALNYQYDGKLQNVIKNPIVKELYPEQKIKIYSRITLTIE 73
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 307 KYVTEVKDIIKNPPNSGKYDKLKNELVTRLSSSQEQRVRQLLTHEDIGDRKPSQFLRHLQ 486
K +K+ KN NS K+K L + +S+QEQ ++L +G+++ + ++
Sbjct: 16 KVPKSLKEESKNSQNSQNSQKIKRTLTDKNASNQEQGTKKL--ESSVGEQESATKRAKIE 73
Query: 487 SL 492
+L
Sbjct: 74 NL 75
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -2
Query: 519 EVIWYTGTSKALQVS*KLRRFAIADIFMCQ*LTYPLLLRRRESCYEFVLQLVIFS 355
E+ W TG V+ +R + IF YP+L+ + C L +FS
Sbjct: 184 ELTWTTGNPNLSSVTISIRPEDLKKIFRSSSFFYPILMEHIKRCTSLDLTNSVFS 238
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +1
Query: 262 SDMTKYNYVLANLDYKYVTEVKDIIKNPPNSGKYDKLKNELVTRLSSSQEQRVRQLLTHE 441
+++ K NYV +DYK VKD +K+ + G D + + L+ + + + + L
Sbjct: 3052 TELNKQNYVNRMVDYKLRESVKDQLKSLLD-GFSDIIPSHLIQIFNEQELELLISGLPEI 3110
Query: 442 DIGDRK 459
DI D K
Sbjct: 3111 DIDDWK 3116
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 256 ITSDMTKYNYVLANLDYKY-VTEVKDIIKNPPNSGKYDKLKNEL-VTRLSSSQEQ 414
+T + K Y++ + Y+ + +KD NPP S KY + L V R++ EQ
Sbjct: 833 VTFNYKKGEYLIRHFSYENGILTMKDSHSNPPVSPKYSSSQKHLKVERINIYGEQ 887
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 389 VTSSFFNLSYFPEFGGFFIMSLTSVTYL 306
VTSS + L Y P++ + + LTS Y+
Sbjct: 1062 VTSSLYGLGYLPDYVIYHELVLTSKEYM 1089
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/61 (19%), Positives = 29/61 (47%)
Frame = -1
Query: 553 ESVIGLTIMIARSHLVHWDQQGSASVVKTETVCDRRYLHVSVTDVPSALATTRVLLRVRS 374
+ + GL + +A + W+ + +C+R ++++ P ALA L++R+
Sbjct: 82 KKLYGLALQLALNRCT-WEPSILTREEASVMLCNRAAAEIALSQFPEALADANAALKIRN 140
Query: 373 S 371
+
Sbjct: 141 N 141
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.8 bits (54), Expect = 4.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 358 KYDKLKNELVTRLSSSQEQRVRQLLTHEDIGDRKPSQFLRHLQSL 492
+YD+++NEL +LS +E + + E GDR SQ L ++ S+
Sbjct: 419 EYDEMENELKAKLSRKKEIEI----SLESQGDRM-SQLLANITSI 458
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 369 VEERTRNKTLVVARAEGTSVTDT*RYRRSQTVSVFTTLAE 488
+++ T T VV+ T TDT R S+ VSV TL E
Sbjct: 39 IDQHTSTWTPVVSSVTSTQ-TDTLRVTISEVVSVTATLTE 77
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 208 PTLWFAQLEGQFALANITSDMTKYNYVLANLDYKYVTEVKDI 333
P + F E + L+N+TSD V + D+K T K I
Sbjct: 6 PEVIFKGTEFEEQLSNLTSDSQANKRVYEDYDFKDETSAKPI 47
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 274 KYNYVLANLDYKYVTEVKDIIK 339
K+N+V N+ Y V E ++I+K
Sbjct: 338 KWNFVAINVPYTEVCEAQEIVK 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,270
Number of Sequences: 5004
Number of extensions: 38908
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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