Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I22
(556 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0186 - 2077298-2078731 35 0.038
04_04_0708 - 27441373-27442611 29 3.3
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 29 3.3
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 28 4.4
05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615 28 5.8
02_05_0030 + 25209067-25209130,25209231-25209400,25210482-252116... 28 5.8
12_01_0447 - 3530766-3530942,3531058-3531147,3531396-3531478,353... 27 7.6
>10_01_0186 - 2077298-2078731
Length = 477
Score = 35.1 bits (77), Expect = 0.038
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 14/123 (11%)
Frame = +1
Query: 229 LEGQFALANITSDMTKYNYVLANLDYKYVTEVKDIIKNPPNSGKYDKLKNELV------- 387
L G AN+ +D+ + N+ L + K+++K+ N KY + +++
Sbjct: 332 LGGSLITANVVADLLRRNHDF-QLWNSVLQRFKEMVKS--NLSKYGEHPKDIIEKEHPID 388
Query: 388 -TRLSSSQEQRVRQL---LTHEDIGDRK-PSQFLRHLQSLAG-PSVPD-DFVRSLWSSRL 546
TR SS R+ + + +D +RK PS R L +AG ++PD DF W SR+
Sbjct: 389 ITRFGSSYRTRLHLMPPRVERDDSPNRKKPSLLFRDL--IAGCAAIPDGDFELVTWESRI 446
Query: 547 PTH 555
P H
Sbjct: 447 PPH 449
>04_04_0708 - 27441373-27442611
Length = 412
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +1
Query: 304 YKYVTEVKDIIKNPPNSGKYDKLKNELVTRLSSSQEQRVRQLLTHEDIGDRKPSQFL 474
Y Y E D+ + + G D+ EL TRL+ +E+ V ED DRK +F+
Sbjct: 344 YNYEEEEGDVDRLDDDDGSCDEELFELATRLAPEEEEVV------EDEVDRKADEFI 394
>02_02_0157 -
7280335-7280541,7280656-7280762,7280918-7281097,
7281182-7281277,7281378-7281459,7281553-7283037,
7283376-7283450,7283521-7283598,7283708-7283791,
7283885-7283965,7284073-7284291,7284398-7284648,
7284748-7284796
Length = 997
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 349 NSGKYDKLKNELVTRLSSSQEQRVRQLLTHEDI 447
N + K KN++V RL+ +E+ VR L EDI
Sbjct: 424 NKDRLIKEKNDVVLRLTEEKEEMVRLLKEKEDI 456
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Frame = -1
Query: 520 RSHLVHWDQQGSASVVKTETVCDR----RYLHVSVT---DVPSALATTRVLLRVRSS-TC 365
RSH+ D GS V KTE DR ++++ S++ DV SALA+ + R+S
Sbjct: 415 RSHIWLVDLAGSERVNKTEVEGDRLKESQFINKSLSALGDVISALASKNAHIPYRNSKLT 474
Query: 364 HIFPSSAG 341
H+ SS G
Sbjct: 475 HLLQSSLG 482
>05_07_0174 + 28156399-28156525,28157094-28157155,28157428-28158615
Length = 458
Score = 27.9 bits (59), Expect = 5.8
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Frame = +1
Query: 151 DNVTVNSVSVKVPPFWPDEPTLWFAQLEGQFALANITSDMTKYNYVLANLDYKYVTEVKD 330
D+ + + V PF D + F ++ A+ +I D + + + + + V E++D
Sbjct: 194 DDPCIGAAIVHCTPFITDSRQITFWRMGSHMAIPSIPPD---HQFDVVSNQF-VVEEMED 249
Query: 331 IIKNPPNSGKYDKLKNELVTRLSSSQEQRV---RQLL---THEDIGDRKPSQFLRHL 483
+I + KLKN V RL+ Q V R+ L +D+G +P R+L
Sbjct: 250 VIYHKGAFHFVTKLKNVFVCRLALHQADLVVDHREWLMFAPQDDLGYPRPVATARYL 306
>02_05_0030 +
25209067-25209130,25209231-25209400,25210482-25211668,
25211695-25212011,25212669-25213374,25214248-25215448
Length = 1214
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 187 PPFWPDEPTLWFAQLEGQFALANIT-SDMTKY-NYVLANLDYKYVTEVKDII 336
P F PT F + +F L NI+ + TKY N +L + +Y T V +
Sbjct: 659 PSFAARHPTYLFTAIPSEFTLYNISHTSTTKYPNVLLRSPAIQYTTTVNSTV 710
>12_01_0447 -
3530766-3530942,3531058-3531147,3531396-3531478,
3531571-3531886,3531979-3532040,3532139-3532244,
3532346-3532412,3532495-3532608,3532706-3532784,
3533043-3533213,3534223-3534355,3534922-3535081,
3535179-3535330
Length = 569
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 352 SGKYDKLKNELVTRLSSSQEQRVRQLLTHEDIGDR 456
S ++L + + RLS + E+ + QLL +D GDR
Sbjct: 455 SESLNELASSIKQRLSITDEEGIMQLLYEDDEGDR 489
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,756
Number of Sequences: 37544
Number of extensions: 244976
Number of successful extensions: 640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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