Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I21
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 49 4e-07
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 48 7e-07
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 40 2e-04
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 39 6e-04
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 34 0.016
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 33 0.037
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 1.8
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.4
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 5.6
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 7.4
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 9.8
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 25 9.8
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo... 25 9.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.8
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 49.2 bits (112), Expect = 4e-07
Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Frame = +2
Query: 80 KKTETSDGSSEEEFVVEKVLDKRTVK--GKIQYLLKWKGYKE-DESTWEPVENLD-CEEL 247
K+ E + E+E+VVEKVL R + G +YLLKW+GY + ++TW + C++L
Sbjct: 68 KEEEGGEEEEEDEYVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCSGCKQL 127
Query: 248 IKAF 259
I+A+
Sbjct: 128 IEAY 131
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 48.4 bits (110), Expect = 7e-07
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Frame = +2
Query: 92 TSDGSSEEEFVVEKVLDKRTVK--GKIQYLLKWKGYKE-DESTWEPVEN-LDCEELIKAF 259
+ D +S+EEF VE +LD R K QY LKW+GY + ++TW E+ C ELI A+
Sbjct: 167 SEDKNSDEEFAVEMILDSRMKKDGSGFQYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Frame = +2
Query: 89 ETSDGSSEEE-FVVEKVLDKRTVKGKI-QYLLKWKGYKEDESTWEPVENL-DCEELIK 253
++++G ++ + + VE +L R K I +Y +KW GY ++TWEP +NL E+++K
Sbjct: 11 DSNEGETDADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 110 EEEFVVEKVLDKRTVK-GKIQ-YLLKWKGYKEDESTWEPVENL 232
+EE+ VE+++D++ + G ++ Y ++W Y TWEP ENL
Sbjct: 5 QEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENL 47
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 33.9 bits (74), Expect = 0.016
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 77 DKKTETSDGSSEEEFVVEKVLDKRT-VKGKIQYLLKWKGYKEDESTWEPVE 226
D + E + EE +VE+++ T +GK +Y +KW+ D TWE +
Sbjct: 290 DIERERKNMLFEEYKIVERIVASETNEEGKTEYFVKWRQLPYDNCTWEDAD 340
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = +2
Query: 74 KDKKTETSDGSSEE-EFVVEKVLDKRT--------VKGKIQYLLKWKGYKEDESTWEPVE 226
+D++ E + EE E +++ VL+ R K QYL+KW+ +TWE
Sbjct: 191 EDEEEEVEEQVEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYLIKWQEVSHLHNTWEDYS 250
Query: 227 NL 232
L
Sbjct: 251 TL 252
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 32.7 bits (71), Expect = 0.037
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 71 KKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWE 217
+K++K E + + + +V K L+ G ++YL+KWK D TWE
Sbjct: 276 EKERKRENYEEYKQVDRIVAKHLNS---DGSVEYLVKWKQLLYDFCTWE 321
Score = 31.5 bits (68), Expect = 0.085
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Frame = +2
Query: 86 TETSDGSSEEEFVVEKVLDKRTVKGK--------IQYLLKWKGYKEDESTWEPVENL 232
TE S+ E+ ++ VLD R ++G ++L+KW + TWEP N+
Sbjct: 181 TEVSE-EPEDTRAIDVVLDHRLIEGHDGSTPSEDYEFLIKWVNFSHLHCTWEPYNNI 236
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 125 VEKVLDKRTVKGKIQYLLKWKGYKEDESTW 214
VE ++ ++ +K QY +KW G +TW
Sbjct: 822 VEALIGRQKLKKSFQYEIKWFGKPHKYNTW 851
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 191 YKEDESTWEPVENLDCEELIKAF 259
Y++D++ +EP ENL+ +EL + F
Sbjct: 60 YQKDKNIYEPKENLEEKELSEGF 82
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 32 FTVYHINYY-LEM-GKKDKKTETSDGSSEEEFVVEKVLDKRTVK 157
FT +HINYY + M G K +K + SS + L ++T++
Sbjct: 108 FTKHHINYYHIAMPGSKHRKNDCISSSSNPDISDVDDLVRKTLQ 151
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 59 LEMGKKDKKTETSDGSSEEEFVVEKV 136
LE KDKK E+ S +EE VE V
Sbjct: 35 LETSAKDKKHESPSMSEDEEGSVENV 60
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 104 SSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDE 205
SS E+ + E V D ++ KIQ ++W+ + E +
Sbjct: 205 SSPEQELRENVRDPYSLLSKIQPRVRWQSHMESQ 238
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +2
Query: 71 KKDKKTETSDGSSEEEFVVEKVLDKRTVKGKIQYLLKWKGYKEDESTWEPVENLDCEELI 250
K D+ E DG + +FV ++ K + + L+ +GY + + + +E+ D EE++
Sbjct: 428 KYDRMPELLDGKNVADFVDPEIEAKLLALDEEEERLEREGYYDSD---QEIEDADEEEVL 484
Query: 251 K 253
+
Sbjct: 485 E 485
>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 53 YYLEMGKKDKKTETSDGSSEEEFVVEKVLD 142
Y LEMG ++K + S S +F+V LD
Sbjct: 16 YELEMGPINEKLDRSLNSHLNQFIVHSSLD 45
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 356 FFLYWFPHSTLAHVFC 309
FFL W H+TLA ++C
Sbjct: 4045 FFLSWL-HATLAEIYC 4059
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,328
Number of Sequences: 5004
Number of extensions: 33653
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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