Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I20
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 31 0.27
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 29 1.1
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 29 1.9
03_06_0262 + 32730927-32731634,32731713-32732159,32732247-327331... 28 2.5
07_03_0342 + 16963528-16963598,16963668-16964235,16964350-169647... 28 3.3
05_04_0113 + 18085705-18085833,18086442-18086885 28 3.3
05_04_0035 + 17378541-17381276 28 3.3
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 27 4.3
10_01_0169 - 1899491-1899666,1901358-1901638,1902468-1902477,190... 27 4.3
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 4.3
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 27 5.7
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 27 5.7
01_01_0070 - 542603-542686,542803-543441 27 5.7
11_04_0039 + 12679350-12680057,12680136-12680582,12680670-126815... 27 7.6
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 31.5 bits (68), Expect = 0.27
Identities = 25/71 (35%), Positives = 32/71 (45%)
Frame = -3
Query: 368 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 189
+PG V +P P LSSA A AA S+ L S P A P +P P++P
Sbjct: 17 SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70
Query: 188 SELSVRAPCAS 156
S S A +S
Sbjct: 71 SSSSAAAAGSS 81
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 29.5 bits (63), Expect = 1.1
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = -3
Query: 392 RQLSTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG- 216
++L + + C S L P ++ SA + P+ C L+ P F L A+G
Sbjct: 455 KELGSPTQKRSSCASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGL 510
Query: 215 TLTPAPEVPSE-LSVRAPCASLR 150
P PE +RA CA ++
Sbjct: 511 AYKPTPETRVHGAQLRADCAKVQ 533
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 28.7 bits (61), Expect = 1.9
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = -3
Query: 392 RQLSTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG- 216
++L + + C S L P ++ SA + P+ C L P F L A+G
Sbjct: 353 KELGSPTEKCSSCASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGL 408
Query: 215 TLTPAPEVPSE-LSVRAPCASLR 150
P PE +RA CA ++
Sbjct: 409 AYKPTPETTVHGAQLRADCAKVQ 431
>03_06_0262 +
32730927-32731634,32731713-32732159,32732247-32733133,
32733212-32733382,32733465-32733753,32733839-32733877,
32733983-32734021
Length = 859
Score = 28.3 bits (60), Expect = 2.5
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = -3
Query: 392 RQLSTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG- 216
++L + + C S L P ++ SA + P+ C L P F L A+G
Sbjct: 353 KELGSPTEKRSSCASTELAENPTSVDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGL 408
Query: 215 TLTPAPEVPSE-LSVRAPCASLR 150
P PE +RA CA ++
Sbjct: 409 AYKPTPETRVHGAQLRADCAKVQ 431
>07_03_0342 +
16963528-16963598,16963668-16964235,16964350-16964760,
16964848-16965051,16968663-16969032,16972466-16972601,
16972680-16972779,16972933-16973190,16973276-16973314,
16973420-16973458
Length = 731
Score = 27.9 bits (59), Expect = 3.3
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = -3
Query: 392 RQLSTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGT 213
++L + + C S L P ++ SA + P+ C L P T ++PA
Sbjct: 318 KELGSPTEKRSSCASTELAENPTSVDSAVDHITEPTSCTLTVRVMP---TFTFTVPAAEG 374
Query: 212 LT--PAPEVPSE-LSVRAPCA 159
L P PE +RA CA
Sbjct: 375 LAYKPTPETRVHGAQLRADCA 395
>05_04_0113 + 18085705-18085833,18086442-18086885
Length = 190
Score = 27.9 bits (59), Expect = 3.3
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +1
Query: 118 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 270
E+ TS+R R G LT+ ++ G GAG ++P AG D + G +
Sbjct: 30 EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89
Query: 271 TNRQKLGAATAGVALD 318
++ + AA+AG+ D
Sbjct: 90 SSLAAMVAASAGIQPD 105
>05_04_0035 + 17378541-17381276
Length = 911
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 398 LCRQLSTLSPNPGMCVSVRLTPWPFTLSSATPAVAAP 288
L R+LSTL P+P + S T P +SAT + P
Sbjct: 9 LLRRLSTLHPHPSLSSSSSSTASPAAAASATHHLLPP 45
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 27.5 bits (58), Expect = 4.3
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = -3
Query: 392 RQLSTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG- 216
++L + + C S LT P ++ SA + P+ C L P F A+G
Sbjct: 302 KELGSPTEKRSSCASTELTENPTSVDSAVDYITEPTSCTLTVRVMP----TFTVPAAEGL 357
Query: 215 TLTPAPEVPSE-LSVRAPCASLR 150
P PE +RA CA ++
Sbjct: 358 AYKPTPETRVHGAQLRADCAKVQ 380
>10_01_0169 -
1899491-1899666,1901358-1901638,1902468-1902477,
1902696-1902786,1903993-1904031,1904117-1904405,
1904488-1904658,1904737-1905623,1905711-1906157,
1906236-1906460,1906536-1906943
Length = 1007
Score = 27.5 bits (58), Expect = 4.3
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = -3
Query: 392 RQLSTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG- 216
++L + + C S L P + SA + P+ C L P F L A+G
Sbjct: 328 KELGSPTEKRSSCASTELAENPTLVDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGL 383
Query: 215 TLTPAPEVPSE-LSVRAPCASLR 150
P PE +RA CA ++
Sbjct: 384 AYKPTPETRVHGAQLRADCAKVQ 406
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.5 bits (58), Expect = 4.3
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 329 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPE-VPSELSVRAPCASL 153
P T+S++T AV+ + + + + T LPA T APE +P+ S AP S
Sbjct: 310 PTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPENIPAVTS--APANSS 367
Query: 152 RTLE 141
TL+
Sbjct: 368 STLK 371
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +1
Query: 91 EPVY--YIQHYE---EPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGND 234
EP Y + HY PEL+ R DA G + L D G +P G D
Sbjct: 157 EPFYGTKVSHYPPCPRPELVDGLRAHTDAGGLILLFQDDRFGGLQMIPNRGGD 209
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 27.1 bits (57), Expect = 5.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 233 SLPAKGTLTPAPEVPSELSVRAP 165
S+P + +L PAP S+L V AP
Sbjct: 870 SIPVQNSLPPAPPSASQLQVHAP 892
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 27.1 bits (57), Expect = 5.7
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = -3
Query: 341 LTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIF--LSLPAKGTLTPAPEVPSEL-SVR 171
+TP P T +P A P L + P+A +LP T P E P+EL
Sbjct: 100 VTPPPVTPPPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEAPAELPPAE 159
Query: 170 APCASLRTLELVNSSG 123
AP S N G
Sbjct: 160 APTKSKNKHRKKNKRG 175
>11_04_0039 +
12679350-12680057,12680136-12680582,12680670-12681556,
12681635-12681805,12681872-12682160,12682390-12682428
Length = 846
Score = 26.6 bits (56), Expect = 7.6
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Frame = -3
Query: 392 RQLSTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG- 216
++L + + C S L P ++ SA + P+ C L + LT F L +G
Sbjct: 353 KELGSPTEKRSSCASTELAENPTSVDSAVDHITEPTSCTLTVR---VMLT-FTVLATEGL 408
Query: 215 TLTPAPEVPSE-LSVRAPCASLR 150
P PE +RA CA ++
Sbjct: 409 AYKPTPETRVHGAQLRADCAKVQ 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,894,748
Number of Sequences: 37544
Number of extensions: 208480
Number of successful extensions: 731
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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