Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I18
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 28 1.00
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 1.7
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 2.3
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 25 5.3
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 25 7.0
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.3
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 9.3
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 25 9.3
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce... 25 9.3
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 9.3
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.00
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 259 DDNILKLPKVTHDAELIANL--PENFDPRDKWPECPTLNEIRDQGSCGSCWAFGA 417
++++ K P +++ + I L P++ D WP L + GS C FG+
Sbjct: 37 EESLKKYPVISNPQDFIVTLDGPDDPDLAVNWPLAKKLRNVAVMGSACLCAGFGS 91
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 207 EVPASFPCVLFLIYQIYKRI*ERM 136
+V A FP ++FL++Q YK + +M
Sbjct: 240 KVTAEFPIIVFLLFQTYKDLIPKM 263
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -1
Query: 446 MHTRSVIASTAPKAQQLPHDP*SLISFNVGHSGHLSLGSKFSGRFAISSAS*VTLGN 276
M + S I S+ P QLP P + +SF + LG FS +SS S T N
Sbjct: 137 MTSMSSITSSTPTPSQLPVRPSTSLSF----FDDIPLGPSFSAETILSSLSISTSNN 189
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 5.3
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -3
Query: 75 RSHLSVFYFLLQSRSVNKL 19
+SHL+ +YF L++RS+N +
Sbjct: 261 QSHLNSYYFSLRTRSLNNV 279
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 257 FNAPINILMCANGVCVGKFRPAFHVFCFLFIKFINASESGWG 132
FN + I +C GV G FH + +L I + G+G
Sbjct: 410 FNNTMTIALCVFGVFAGAMHRVFHRYKYLQIIGLVIKIVGYG 451
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 24.6 bits (51), Expect = 9.3
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -3
Query: 465 LSCIRVNAYSI--CHRFHRSESPAAAARSLIPNLVQCRAFGPLIPRVEILWKVC 310
++C+ V + CHR +E+ + LIP+L A P IP + +C
Sbjct: 1 MTCVNVCFFLFPPCHRNKITEADKSLVDLLIPSLCCSLAVFPSIPLINTHSNLC 54
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 169 LSNL*THLRADGASHW 122
LSNL ++ R D +SHW
Sbjct: 871 LSNLFSYCRVDASSHW 886
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 120 HNSENTRERDVQSTRRSHLSVFYFLLQSRSVNK 22
HNS T+E ++ H S F LL+S +V K
Sbjct: 305 HNSLQTKEFVAKNLTGGHASCFSVLLKSDTVAK 337
>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 433 DRVCIYSNATKHFHFSAEDLVKC--CPI 510
D VC+YS+ K +AE++ K CP+
Sbjct: 100 DIVCVYSSPQKRAKRTAEEITKVANCPL 127
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 64 KMAPSCALYVALACILAV---VASDLPHPLSDAFINLINKKQN 183
++APS + A+ L + + S + PLS+ FIN IN++ +
Sbjct: 125 EIAPSSLINKAVQSTLRLSEPLVSPIKCPLSEQFINFINQQDS 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,607
Number of Sequences: 5004
Number of extensions: 43033
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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