Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I16
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272... 90 9e-19
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 29 2.3
02_02_0309 + 8833709-8834044,8834135-8834289,8834427-8834511,883... 28 4.0
10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028 27 5.3
07_03_1133 - 24199643-24200422,24200786-24200968,24201241-242013... 27 5.3
06_03_0917 + 25935893-25936531 27 5.3
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 27 5.3
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 27 7.1
05_07_0281 - 28929983-28930103,28930266-28930453,28931741-28931902 27 9.3
01_06_0265 - 28011181-28011240,28011298-28011375,28011493-280118... 27 9.3
>05_07_0331 -
29324967-29326256,29326919-29327020,29327226-29327278,
29327628-29327674,29327762-29327841,29327933-29328016,
29328383-29328433,29328925-29329050,29329231-29329347,
29329710-29329851,29329986-29330053,29330509-29330608,
29330713-29330840,29330929-29330997,29331083-29331205
Length = 859
Score = 89.8 bits (213), Expect = 9e-19
Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 17/144 (11%)
Frame = +2
Query: 2 FKLHARERKFVVREFSYNEADLVAGKNEITKLVTDKKKQFGPLVRWLKVNFSE------- 160
FK+ ARE+ F VR+F Y+ + K E+ KL+ D++ L++W ++SE
Sbjct: 239 FKVRAREKGFQVRDFEYSSEAQESRKEELEKLMQDQEAMRASLLQWCYASYSENTIYVRH 298
Query: 161 ----------CFCAWIHVKALRVFVESVLRYGLPVNFQAVVMVPSRKSMKKLRDVLQQLY 310
F +W+H A+RVFVES+LRYGLP +F + V+ PS+K KK+R +L++L
Sbjct: 299 AKVQNFVLLYVFSSWMHFCAVRVFVESILRYGLPPSFLSAVLAPSQKGEKKVRSILEELC 358
Query: 311 AHLDHSAQHHGSSAQDTVELAGLG 382
++ HS ++D V +AGLG
Sbjct: 359 GNV-HSIYW---KSEDDVGVAGLG 378
>10_07_0081 -
12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/60 (20%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +2
Query: 161 CFCAWIHVKALRVFVESVLRYGLPVNFQAVVMVPSRK--SMKKLRDVLQQLYAHLDHSAQ 334
C C ++H+++ + ++S +RY L + Q ++ + + K ++ +++ + Q +Y+H+ ++ +
Sbjct: 722 CRCEYLHLRSSALVIQSGVRYMLAI--QKLLQLKNNKAATIIQVQSMHQNIYSHVAYTVK 779
>02_02_0309 +
8833709-8834044,8834135-8834289,8834427-8834511,
8835009-8835057,8835098-8835272,8835523-8835593,
8835723-8836351
Length = 499
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 103 GDELRDFVLPGDEIRLVVRELADHELAFARV 11
GD LRD V+ G+E++L + +L ++ A +
Sbjct: 143 GDGLRDIVITGEELKLSLAQLREYSKRHAYI 173
>10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028
Length = 341
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 154 KVDLQPSHQRTKLLLLVGDELRDFVLPGDEIRLVVRELADHELAFARVQ 8
KV + SHQRT L + +L F D+++ V++ A AR+Q
Sbjct: 207 KVKILESHQRTNLDIAQVKKLECFSNKSDQVKSAVQKKAIEPGGHARIQ 255
>07_03_1133 -
24199643-24200422,24200786-24200968,24201241-24201321,
24201439-24201567,24201814-24201885,24201970-24202038,
24202130-24202513,24203813-24203926,24204033-24204074
Length = 617
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 159 SEKLTFNHRTNGPNCFFLSVTSFVISFFP 73
SEK T ++ N P+C + + F+I F+P
Sbjct: 120 SEKSTTRYKDNNPSCCSSTSSVFLIIFYP 148
>06_03_0917 + 25935893-25936531
Length = 212
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 339 WCWAEWSRWAYSCWSTSRSFFMLLRDG 259
W ++E++RW S W SR F++ DG
Sbjct: 169 WLFSEYARWRRSVWMPSR-FYLERIDG 194
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 27.5 bits (58), Expect = 5.3
Identities = 21/68 (30%), Positives = 29/68 (42%)
Frame = +2
Query: 56 EADLVAGKNEITKLVTDKKKQFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPV 235
EA VA I V D+ L WL + + A + V AL V+ + G P
Sbjct: 67 EASAVAALGPIVGAVVDRLAYLQVLRLWLLLQGASFVAAGVSVTALLVYGARLAAAGFPA 126
Query: 236 NFQAVVMV 259
F A+V+V
Sbjct: 127 -FVALVVV 133
>01_07_0298 -
42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 187 FNVDPSAEALRKVDLQPSHQRTKLL 113
+NVD +AEA R+VDL + KL+
Sbjct: 673 YNVDSAAEASRRVDLLVKQVKEKLI 697
>05_07_0281 - 28929983-28930103,28930266-28930453,28931741-28931902
Length = 156
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 92 KLVTDKKKQFGPLVRWLKVNFSECF 166
+LV +K+K+ LVR K N CF
Sbjct: 96 RLVFEKRKELSDLVREYKANSGRCF 120
>01_06_0265 -
28011181-28011240,28011298-28011375,28011493-28011802,
28012913-28013533,28013733-28013818
Length = 384
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +2
Query: 260 PSRKSMKKLRDVLQQLYAHLDHSAQHHGSSAQDTVELAGLGFG 388
PS S +AH +H HH S + DT + G G
Sbjct: 97 PSSSSAAAWSPARDHAHAHHNHHHHHHPSDSSDTASPSSNGAG 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,730,830
Number of Sequences: 37544
Number of extensions: 201823
Number of successful extensions: 617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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