Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I15
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1408 + 33349232-33349450,33349715-33349782,33349853-333498...    29   1.6  

>04_04_1408 +
           33349232-33349450,33349715-33349782,33349853-33349881,
           33349973-33350169,33350247-33350459,33350621-33350755,
           33351122-33351238,33351332-33351385,33351574-33351690,
           33352199-33352292,33352575-33352585
          Length = 417

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = +1

Query: 85  TVSQILNTNL*NSS------YICNSSMIKMDLPIKNSTIVTNYLLVLSILIFMKQAVH-N 243
           TV  +LN    N++      Y   + MI++       +I++N LLV+    F    VH N
Sbjct: 105 TVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRN 164

Query: 244 KDHISTRNI*IFNTKLY*NCFCNVIFP 324
           KD + ++   + N+ L       ++FP
Sbjct: 165 KDQVFSKATAVVNSGLLLMAVMGLMFP 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,110,294
Number of Sequences: 37544
Number of extensions: 214493
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)