Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I15
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    27   5.8  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    27   5.8  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    27   5.8  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      27   7.6  

>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 48  LSYTNILQLYCNDCFTNIKYKPLKQ*LHL*QFYDKNGFTNKKFYY 182
           L   NI  +Y N C+ + +  PL     L   Y K    NKK Y+
Sbjct: 685 LGKPNIHDIYANACYEHQQLDPLSTFDQLRDHYTKQQPLNKKTYF 729


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 48  LSYTNILQLYCNDCFTNIKYKPLKQ*LHL*QFYDKNGFTNKKFYY 182
           L   NI  +Y N C+ + +  PL     L   Y K    NKK Y+
Sbjct: 685 LGKPNIHDIYANACYEHQQLDPLSTFDQLRDHYTKQQPLNKKTYF 729


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 48  LSYTNILQLYCNDCFTNIKYKPLKQ*LHL*QFYDKNGFTNKKFYY 182
           L   NI  +Y N C+ + +  PL     L   Y K    NKK Y+
Sbjct: 685 LGKPNIHDIYANACYEHQQLDPLSTFDQLRDHYTKQQPLNKKTYF 729


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical protein
            F22B5.7 protein.
          Length = 1415

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 118  NSSYICNSSMIKMDLPIKNSTIVTNYL 198
            N+ Y+C  + +KMD+   +  IV NYL
Sbjct: 1175 NAFYVCALTELKMDISDSHILIVDNYL 1201


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 118  NSSYICNSSMIKMDLPIKNSTIVTNYL 198
            N+ Y+C  + +KMD+   +  IV NYL
Sbjct: 1175 NAFYVCALTELKMDISDSHILIVDNYL 1201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,322,606
Number of Sequences: 27780
Number of extensions: 221930
Number of successful extensions: 402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)