Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I15
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.34 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.34 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   3.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   3.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.5  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 413 YRVYSSLCLNINGTNLEFQS*HGLVPNSARGKIT 312
           Y +Y  L  +I G N +FQ+ + L+P++ +   T
Sbjct: 380 YGMYDILARDILGYNFDFQNKNNLIPSALQSYST 413


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 413 YRVYSSLCLNINGTNLEFQS*HGLVPNSARGKIT 312
           Y +Y  L  +I G N +FQ+ + L+P++ +   T
Sbjct: 380 YGMYDILARDILGYNFDFQNKNNLIPSALQSYST 413


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 15  STNVAV*FIPFLSYTNILQLYCNDCFTNI 101
           STN A   +P +SY   + +Y   CF  +
Sbjct: 269 STNAA---LPKISYVKSIDVYLGTCFVMV 294


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 15  STNVAV*FIPFLSYTNILQLYCNDCFTNI 101
           STN A   +P +SY   + +Y   CF  +
Sbjct: 269 STNAA---LPKISYVKSIDVYLGTCFVMV 294


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 278 KIYMFLVDIWSLLCTACFMNIKMDSTSK*LVTIVEF 171
           KIY+  ++   + CTA F+ +K +     L  + EF
Sbjct: 688 KIYLNTMESHEVRCTAVFLLMKTNPPLSMLQRMAEF 723


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 15  STNVAV*FIPFLSYTNILQLYCNDCFTNI 101
           STN A   +P +SY   + +Y   CF  +
Sbjct: 208 STNAA---LPKISYVKSIDVYLGTCFVMV 233


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 474 YITAVTELLPSILAQAAIRRIPSLFIF 394
           Y +   E  P I  +  +RR P  ++F
Sbjct: 192 YYSCCPEPYPDITYEIRLRRRPMFYVF 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,225
Number of Sequences: 438
Number of extensions: 2822
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)