Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I14
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   146   2e-36
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   144   4e-36
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   0.60 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   2.4  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    26   2.4  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   5.6  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    25   7.3  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   7.3  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    24   9.7  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    24   9.7  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   9.7  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  146 bits (353), Expect = 2e-36
 Identities = 70/125 (56%), Positives = 94/125 (75%)
 Frame = +2

Query: 20  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 199
           ML+PK+NR +I++ LF++GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 200 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 379
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R++   +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADA 116

Query: 380 AYRRA 394
            YRRA
Sbjct: 117 GYRRA 121


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  144 bits (350), Expect = 4e-36
 Identities = 71/125 (56%), Positives = 93/125 (74%)
 Frame = +2

Query: 20  MLMPKQNRVSIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 199
           ML+PK+NR +I++ LF +GV+VAKKD++ PKHP++  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 200 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 379
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R + D +
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-A 115

Query: 380 AYRRA 394
            YRRA
Sbjct: 116 GYRRA 120


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 333 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 434
           Q AGL+  HE L+  ++  AH +  LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -1

Query: 425  PSYHEELQLVVRADKLIYLQLFVLEHQACQLHHDVLSLYALTSSGLLVQ-FQEVSAGKF* 249
            PSY +     +  +K ++L L  L H   +    +LSLY  + +  +V+    V    F 
Sbjct: 992  PSYFDVFFPSLGMEKRVHLDLLNLTHVRFEEDQGILSLYDESGAVTVVKLLTSVKVKLFV 1051

Query: 248  GIQYPHLLNTS 216
             +  P L+N S
Sbjct: 1052 QLSTPPLINVS 1062


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 341 RPDAPARTAEDRSAYRRAPPAGAPH 415
           +P  P +     + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 239 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 343
           IEYL    + PP + P  L   +  E +  G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 139 VRDLLEIWMFGCMVVFLSYHDSLLE 65
           + +  +IW FGC +  + +H S  E
Sbjct: 259 ITEKADIWSFGCTLYTIMFHASPFE 283


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 15/48 (31%), Positives = 16/48 (33%)
 Frame = +2

Query: 269 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 412
           PP   P +   S    T    A     APA  A    AY  AP    P
Sbjct: 58  PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 272 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 379
           P I P ++   V   TVR G+   PD P+ +   R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 220 PVKMPPCELFLNISS 176
           P  +PPCE+FL+ +S
Sbjct: 140 PSYLPPCEVFLDFTS 154


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 232 IC*IPVKMPPCELFLNISSRFK*LHSFDHL 143
           +C +P++ P C L L +S+      S+ HL
Sbjct: 318 VCTLPIECPSCSLVLILSTHL--ARSYHHL 345


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +2

Query: 269 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 403
           P    P+    S R  T     V  P +PAR     SAY  APPA
Sbjct: 281 PYASTPSAAVGSSRGSTPASATV--PISPARGFPTTSAYNPAPPA 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,966
Number of Sequences: 5004
Number of extensions: 34697
Number of successful extensions: 114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)