Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I13
(406 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 0.48
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 28 0.63
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 27 1.1
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 2.6
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 25 3.4
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 3.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 3.4
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.5
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 5.9
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 24 7.8
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 28.3 bits (60), Expect = 0.48
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 301 NGGTYSASDSQSSRYHSGYNGYSGQSSTN 387
N +Y SDSQ S +H G N GQ N
Sbjct: 264 NKHSYKKSDSQQSFHHKGRNTRKGQRHNN 292
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 27.9 bits (59), Expect = 0.63
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 316 CKFRRYLMQTIVCYSLHEMIKKIGIASHQKIRL 218
CK+ + I +LHE +KK+ H K+RL
Sbjct: 649 CKYSNIRKEIIARSNLHENLKKLLAIPHDKLRL 681
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/61 (21%), Positives = 25/61 (40%)
Frame = -1
Query: 337 SFENHWRCKFRRYLMQTIVCYSLHEMIKKIGIASHQKIRLLGNCDLRGYSDHNYPTRKHL 158
+++ +W CK + L + Y ++ + + S K L L + D + KH
Sbjct: 592 AWQEYWHCKIHKLLPKEDASYEQKVVLLTLSLLSKNKHTSLARSLLLSHLDKGWTWNKHS 651
Query: 157 L 155
L
Sbjct: 652 L 652
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 274 YNTQSSALSNGGTYSASDSQSS-RYHSGYNGYSGQSSTNSGHT 399
Y ++ LS +++ + S SGY S S TNSGHT
Sbjct: 346 YGQETELLSTPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHT 388
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 271 GYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYD 405
G T S L + ASD++ +RY + +S S G YD
Sbjct: 182 GKRTSRSTLDRKRFHDASDTERNRYGRSPSPHSRFSEKPRGERYD 226
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 3.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 48 GWFSATPNGWISKTSTMRTRGRKEN 122
GWF G I+K +T+R RK+N
Sbjct: 519 GWFKTGDVGEIAKGNTLRLIDRKKN 543
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 3.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 277 NTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHT 399
++ SS+ S+ + S+S S SS S + SST+S H+
Sbjct: 179 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHS 219
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 4.5
Identities = 12/61 (19%), Positives = 24/61 (39%)
Frame = +1
Query: 196 LEGRNFQEGVXXXXXXXXXXXXXHAGYNTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQ 375
L G N+++ N Q+++ + + Q+ +HS +NGYS
Sbjct: 222 LNGVNYKQNTTNNRVSSFQNSQYSTLNNFQNNSNQSPNSNDLQPLQAEAFHSAHNGYSSS 281
Query: 376 S 378
+
Sbjct: 282 T 282
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 286 SSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHT 399
SSA S+ + S+S S+S S + SS+ S HT
Sbjct: 525 SSATSSSKSSSSSSSRSGSSSSSSSRSGSTSSSGSSHT 562
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 24.2 bits (50), Expect = 7.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 277 NTQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYD 405
N+ ++ S T S SDS SS S + S SST+ + D
Sbjct: 250 NSLLTSQSKNSTPSESDSSSSESSSSVSDSSDLSSTSDSSSGD 292
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.128 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,108
Number of Sequences: 5004
Number of extensions: 30086
Number of successful extensions: 67
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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