Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I12
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 1.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.5
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 4.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 4.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 5.8
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 5.8
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 25 5.8
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 5.8
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 7.6
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 25 7.6
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 7.6
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 8 PNTITTGSSRSIPTATTSRAIPTTATSNSIPGTAACST 121
P++ TG++ S P A+ + + PTT S P A ST
Sbjct: 245 PSSSITGTNDSKPAASNTGSAPTTGFSFGKPAGQAAST 282
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 14 TITTGSSRSIPTATTSRAIPTTATSNSIP 100
+I TG S S+ T T PT+ +S SIP
Sbjct: 234 SIPTGGSSSLSTPITPTVPPTSTSSTSIP 262
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 23 TGSSRSIPTATTSRAIPTTATSNSIP 100
TG S S+ T T PT+ +S SIP
Sbjct: 124 TGGSSSLSTPITPTVPPTSTSSTSIP 149
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 23 TGSSRSIPTATTSRAIPTTATSNSIP 100
TG S S+ T T PT+ +S SIP
Sbjct: 181 TGGSSSLSTPITPTVPPTSTSSTSIP 206
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 20 TTGSSRSIPTATTSRAIPTTATSNSIPGTAACSTT 124
T+ SS SIP TS + T SN +P T+ TT
Sbjct: 141 TSTSSTSIPIPPTSTS-STDTNSNPLPTTSTSCTT 174
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.5
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 11 NTITTGSSRSIPTATTSRAIPTT-ATSNSIPGTAACST 121
++ T+ S S T +T+ A PT+ ATS+S+ TAA ++
Sbjct: 152 SSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNS 189
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 14 TITTGSSRSIPTATTSRAIPTTATSNSIPGTAACSTTIARA 136
T T +S + ++ +S A +ATS+S+ ++ STT A A
Sbjct: 168 TSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATA 208
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 20 TTGSSRSIPTATTSRAIPTTATSNSIPGTAACSTTIARARYPPIVS 157
+T S+ + ++ +S A +ATS+S+ ++ STT A A I S
Sbjct: 202 STTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISS 247
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 14 TITTGSSRSIPTATTSRAIPTTATSNSIPGTAACSTTIARARY 142
T T +S SI ++T S + P T+ SNS + S T + A+Y
Sbjct: 236 TSATATSSSI-SSTVSSSTPLTS-SNSTTAATSASATSSSAQY 276
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 139 VSPNRLSLI*IRDRLKLINRYPHKFNNQPFLFPKDKYQTK 258
VSPN SLI D K+I+ KF +P KD+ +++
Sbjct: 80 VSPNHESLIVSSDDQKIIDDIYEKFGEKPAEDTKDENRSQ 119
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +2
Query: 8 PNTITT--GSSRSIPT-ATTSRAIPTTATSNSIPGTAACST 121
PNT+TT ++ PT TT+ PTT ++ S A C +
Sbjct: 929 PNTVTTTKATTTFTPTPTTTTTPTPTTTSATSTNVIAQCGS 969
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 17 ITTGSSRSIPTATTSRAIPTT--ATSNSIPGTAACSTTIARA 136
+TTG+ TAT ++A T T+ GTA T + A
Sbjct: 1348 VTTGTETQATTATETQATTATEVQTTTGATGTAGTETQVTTA 1389
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 5.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 20 TTGSSRSIPTATTSRAIPTTATSNSIPGTAACSTTIARA 136
++GS RS TTS T AT+N TAA +A
Sbjct: 343 SSGSIRSPSLTTTSAQATTNATNNITTTTAAQDENATKA 381
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 11 NTITTGSSRSIPTATTSRAIPTTATSNSIPGTAACSTTIARARYPPI 151
+T+ G S + P T++ P T + SIP A PP+
Sbjct: 208 STLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPL 254
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 2 SKPNTITTGSSRSIPTATTSRAIPTTATSNSI-PGTAACST 121
S P T T ++R+ P T + +TSNS GT+A ++
Sbjct: 151 STPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATS 191
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 187 LINRYPHKFNNQPF-LFPKDKYQTKTPQSKQETHNTIFNN*HNDVE 321
+I R+ N + F LF D Y+ K P + +IF H D+E
Sbjct: 84 IIFRFYLHTNRENFSLFKNDSYKQKEPITVSHFGESIFLPYHQDIE 129
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 480 YEKLQSITKYKDEESEFLKFI 418
++KLQ + KY D E+LK +
Sbjct: 412 FDKLQKLWKYDDTTLEYLKIV 432
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 341 QIMFTTISTSLC*LLNIVLWVSCFDWGVLVWY 246
QI+F+ + S L+ V W G+LVWY
Sbjct: 274 QILFSLLYFSSEVYLSFVFWSVLTSLGLLVWY 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,102
Number of Sequences: 5004
Number of extensions: 26168
Number of successful extensions: 108
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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