Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I12
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0051 + 4597630-4598391,4598482-4598613,4598653-4599099           28   4.4  
06_01_0127 - 977667-978719,978875-979051                               28   4.4  
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194...    28   4.4  
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699...    28   5.9  
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598     27   7.7  
01_06_0237 + 27770777-27771120,27771209-27771438,27771951-277720...    27   7.7  

>10_02_0051 + 4597630-4598391,4598482-4598613,4598653-4599099
          Length = 446

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 518 NLPEGTLPSKVDPTKNFNRSLNIK 447
           +LP+G LPS++D T+NF  ++  K
Sbjct: 408 SLPDGVLPSELDMTENFGVTVRKK 431


>06_01_0127 - 977667-978719,978875-979051
          Length = 409

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 44  PTATTSRAIPTTATSNSIP-GTAACSTTI 127
           P  TT+R + TTAT+NS P GT+A S T+
Sbjct: 56  PHLTTTR-LGTTATTNSAPDGTSAVSQTV 83


>04_03_1002 -
           21617339-21617362,21618476-21618565,21618755-21619432,
           21619536-21619772,21619849-21619896,21619995-21620045,
           21620301-21620426,21620557-21620697,21621165-21621401,
           21622467-21622571,21622812-21622982,21623306-21623380,
           21623754-21623936,21624151-21624297,21624365-21624472,
           21624605-21624709,21625109-21625213,21625322-21625381,
           21625512-21625579,21625876-21625954,21626208-21626267,
           21626445-21626498,21626834-21626886,21627405-21627494,
           21628265-21628362,21628464-21628852
          Length = 1193

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +2

Query: 5   KPNTITTGSSRSIPTATTSRAIPTTATSNSIPGTAACSTTIARARYPPIVS 157
           +P T ++ S+   PT  ++    +T  S+  P T + +++ A  R PP+ +
Sbjct: 60  RPTTPSSSSAGGRPTTPSAAFARSTTPSSGRPTTPSSASSRAAGRAPPVAA 110


>05_07_0200 -
           28368890-28369021,28369169-28369303,28369918-28369947,
           28370019-28370093,28370222-28370333,28370440-28370621,
           28370723-28370854,28372193-28373479
          Length = 694

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 5   KPNTITTGSSRSIPTATTSRAIPTTATSNSIPGTAACS--TTIARARYPPI 151
           K  +  +GSSR+ P  ++S     +++S+S P T +CS  T  +R+R P +
Sbjct: 256 KSKSYFSGSSRASPANSSS-----SSSSSSAPSTPSCSSDTAASRSRLPEL 301


>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
          Length = 537

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +2

Query: 2   SKPNTITTGSSRSIPT--AT-TSRAIPTTAT-SNSIPGTAACSTTIARARYPP 148
           S   T+ T   R+ PT  AT  +RA+  TA  ++S PG+    T  ARA  PP
Sbjct: 470 SDAKTVATRQRRTAPTFAATPVARAMALTAPPTSSPPGSRLRCTASARATSPP 522


>01_06_0237 +
           27770777-27771120,27771209-27771438,27771951-27772092,
           27772266-27772281
          Length = 243

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +2

Query: 8   PNTITTGSSRSIPTATTSRAIPTTATSNSIPGTAACSTTIARARYPPIVSA 160
           P T    S R+ P ++        A+S S+   AAC    A A  PP   A
Sbjct: 70  PTTTKAASKRAFPDSSPRHG----ASSGSVAAAAACQDKAAPAAAPPAAKA 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,068,407
Number of Sequences: 37544
Number of extensions: 141905
Number of successful extensions: 430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)