Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I12
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.17 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.7  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +2

Query: 2   SKPNTITT-GSSRSIPTATTSRAIPTT-----ATSNSIPGTAACSTTIARAR 139
           S P T+TT G++ ++P A+ +   P T     ATSN+       +TTI   R
Sbjct: 214 STPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRR 265


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -1

Query: 90  FEVAVVGIALE-VVAVGIDLEEPVV 19
           +E+ V  I +  V +VGIDLE P V
Sbjct: 113 YEIWVPDIVMHSVTSVGIDLEMPSV 137


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 329 TTISTSLC*LLNIVLWVSCFDWGVLVWY 246
           TT   S+C  LN+ L +S  +  V +W+
Sbjct: 29  TTRYLSVCERLNLALSLSLTETQVKIWF 56


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 250 QTKTPQSKQETHNTIFN 300
           +T TPQ  QE H  + N
Sbjct: 173 KTATPQQAQEVHEKLRN 189


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 47   TATTSRAIPTTATSNSIPGTAACSTTIARARYPPI 151
            T++TS  I   +   S+P     S +  R   PPI
Sbjct: 1822 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPI 1856


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 47   TATTSRAIPTTATSNSIPGTAACSTTIARARYPPI 151
            T++TS  I   +   S+P     S +  R   PPI
Sbjct: 1818 TSSTSSDISPMSEQKSLPRRGRSSRSSLRTLLPPI 1852


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,354
Number of Sequences: 438
Number of extensions: 1990
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)