Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I11
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   1.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   2.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   3.6  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    24   6.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    24   8.3  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   8.3  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 204 NKYSYYTIGRRYKVSSLVTLVA--SYMMPFCNNLYFG*NICYIQ 79
           NKY  Y  G     S     VA  ++M    +  YFG NI YIQ
Sbjct: 609 NKYMLYADGNVQPTSMQPNYVAGITFMNKITHTTYFGTNIEYIQ 652


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 277 EVSIPPFI*SQNNPCSQPTVTKCTQQVLVLH 185
           EV  P F+  QNN   QPT  K ++    LH
Sbjct: 386 EVEAPSFV-VQNNSAVQPTTQKTSEDSTDLH 415


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 129 SCRMQLTLLNWKLYIYDQLCNTSTCCVHF 215
           S  +Q  LLNW +++Y+ L   +  C ++
Sbjct: 106 SYAIQAKLLNWLIHVYEFLDGNNLLCRYY 134


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 46  RFYKTTFSYFTLYVTDILTKVKVITKWHHVGCN*RY*TGNFIS 174
           R YKT F  +  Y+T  L  +  +T    V     +  GNFI+
Sbjct: 446 RPYKTPFQPYATYLTLFLLALITLTNGFTVFVGHTFTAGNFIA 488


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -2

Query: 240 TLVHNLQSQSVHNKYSYYTIGRRYKVSSLVTLVASYMMPFCNN 112
           T+V+ L + +  NK  +  +   + +SSL    ++ ++PF N+
Sbjct: 592 TIVNALTNSTSQNKSMHLQVQLLHIISSLCQSSSALILPFLNH 634


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 267  IETSVDWTVLTYLYFEATR 323
            IE  VDW   TYLY    R
Sbjct: 952  IEDGVDWLGYTYLYVRMLR 970


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,004
Number of Sequences: 5004
Number of extensions: 24635
Number of successful extensions: 63
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)