Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I11
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601...    26   7.9  
07_03_1396 - 26259614-26259739,26259853-26259939,26260032-262604...    26   7.9  
05_03_0204 + 9984542-9985531                                           26   7.9  

>08_01_0684 +
           6009474-6009582,6009715-6009904,6011412-6011483,
           6011644-6011715,6011806-6011877,6012163-6012234,
           6012283-6012354,6012479-6012550,6012634-6012705,
           6013112-6013183,6013275-6013349,6013453-6013524,
           6013619-6013684,6013752-6013777,6014179-6014558,
           6014642-6014840,6014910-6015068,6015569-6015613,
           6015742-6015973,6016053-6016203,6016306-6016665
          Length = 879

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 85  VTDILTKVKVITKWHHVGCN*RY*TGNFISTT 180
           V +++TK   IT+W   G N  Y T +  STT
Sbjct: 820 VAEVVTKPNYITEWQFRGGNTSYVTSHSGSTT 851


>07_03_1396 -
           26259614-26259739,26259853-26259939,26260032-26260409,
           26260497-26260692,26260794-26261032,26261132-26261272
          Length = 388

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 294 KQSNQQRFQYLRLFKVKITLVHNLQSQSVHNKYSYYTIGRRYKVSSLV 151
           +Q N      L LF +   +   LQ ++ HN Y   T+  R K+SS+V
Sbjct: 22  RQPNHSGKIKLELFPIDKAIQKVLQQEN-HNPYLELTLAPRKKISSVV 68


>05_03_0204 + 9984542-9985531
          Length = 329

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = -2

Query: 291 QSNQQRFQYLRLFKVKITLVHNLQSQSVHNKYS------YYTIGRRY---KVSSLVTL 145
           Q +  R Q+ RL  V++    +L  +  HN  S      +Y +G RY   KV+ L T+
Sbjct: 187 QCSISRRQFRRLLNVRLDFGDDLHEEHTHNPLSIDYLSQFYEVGARYTHGKVAGLRTI 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,086,750
Number of Sequences: 37544
Number of extensions: 133600
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)