Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I11
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical pr...    29   0.75 
Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical pr...    27   3.0  
Z77131-4|CAD66219.1|  203|Caenorhabditis elegans Hypothetical pr...    26   7.0  
U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical pr...    26   7.0  
U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AF067943-8|AAO12414.1|  428|Caenorhabditis elegans Hypothetical ...    26   7.0  
U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase ...    26   9.3  
AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator prot...    26   9.3  

>Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.3 protein.
          Length = 382

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = -2

Query: 357 FFCDNCNSYRIPW*LRNTNKLKQSNQQRFQYLRLFKVKITLVHNLQSQSVHNKYSYYTIG 178
           +FCD  N  +I    + ++K+K+         R  + KIT VH     S    YS Y+I 
Sbjct: 136 YFCDTANEIKIETTEKRSSKVKEM-------ARFMRSKITTVHTPSIFSCIRMYSVYSI- 187

Query: 177 RRYKVSSLVTLVASYMM 127
              K+  L+  +A +++
Sbjct: 188 --VKMLYLIIAIAQFVI 202


>Z70207-3|CAA94132.1|  336|Caenorhabditis elegans Hypothetical
           protein F15A2.3 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 138 SYMMPFCNN--LYFG*NICYIQSKVTKCSFIKPNNLVIHP*YIRF 10
           S +  FC+    YFG N C++   V +CS +  +  ++   Y R+
Sbjct: 75  STLAVFCHGPCKYFGKNTCFVTFAVVQCSVVAASFSILLSFYYRY 119


>Z77131-4|CAD66219.1|  203|Caenorhabditis elegans Hypothetical
           protein C54C6.6 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 356 FFVIIVTVTGSPGSFEIQIS*NSPINRGFNTSVY 255
           FFV++V       SFE+QI  +  I R F  S Y
Sbjct: 75  FFVMVVKNMNKYFSFEVQIIDDKKIKRRFRASNY 108


>U28740-2|AAM51506.2|  417|Caenorhabditis elegans Hypothetical
           protein B0563.6b protein.
          Length = 417

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 99  NQSKGYYKMASCRMQLTLLNWKL 167
           NQ K  Y++  C + LTL+NW L
Sbjct: 84  NQYK-LYQIYQCHLMLTLINWAL 105


>U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical
           protein B0563.6a protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 99  NQSKGYYKMASCRMQLTLLNWKL 167
           NQ K  Y++  C + LTL+NW L
Sbjct: 93  NQYK-LYQIYQCHLMLTLINWAL 114


>AF067943-8|AAO12414.1|  428|Caenorhabditis elegans Hypothetical
           protein F59B1.10 protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 84  CNRYFNQSKGYYKMASCRMQLTLLNWKLYIYDQL 185
           C +  NQ   +Y++A      TLL  K+Y Y +L
Sbjct: 117 CKKMHNQEMNFYEVAGKFNSKTLLIPKVYFYTKL 150


>U78081-1|AAB84362.1|  246|Caenorhabditis elegans RNA polymerase
           transcriptionalregulation mediator protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 81  VCNRYFNQSKGYYKMASCRMQLTLLN 158
           V + + NQ+  +Y+M SC  Q+ + N
Sbjct: 32  VLDYFCNQANAFYEMNSCNQQIRMQN 57


>AC024832-4|AAF59612.1|  250|Caenorhabditis elegans Mediator protein
           6 protein.
          Length = 250

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 81  VCNRYFNQSKGYYKMASCRMQLTLLN 158
           V + + NQ+  +Y+M SC  Q+ + N
Sbjct: 36  VLDYFCNQANAFYEMNSCNQQIRMQN 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,721,415
Number of Sequences: 27780
Number of extensions: 140555
Number of successful extensions: 330
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)