Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I10
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   1.6  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   2.8  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    25   3.8  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    25   6.6  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   6.6  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    24   8.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   8.7  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    24   8.7  

>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 60  NKNIFLNIFYPLVTKNDVYTII*FIRHRHM*QIYFTPNKHLFTKLLLLFIIHNTIYFYL 236
           N+ +FL   +   TK   + I   IRH  +   ++ P KH+     + +   N  + YL
Sbjct: 408 NRTVFLGNLH---TKTKGHEICDLIRHGGLQDFHYIPEKHICFVTFITYSAANAFHDYL 463


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 337 YSISGTRDRYRWFSLIWTFEPITRNETEAIYKCYR*K*IVL*IIKSNSNFVNKCLF 170
           ++++  +D +  + L +  E    N TEAI   +  K   L   K +SN + KC+F
Sbjct: 528 HALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEKCIF 583


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 140 QTHVTNLFHTKQTLIYKITITLYNS*HYLLLSVTL 244
           Q H  +L   ++ L+YKI ++L  S +Y  L+ T+
Sbjct: 190 QQHGPDLRMRRRYLVYKIFMSLIKSDYYFCLTATV 224


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 33  QLKWYGLLRNKNIFL 77
           +L+WYG + N NIF+
Sbjct: 262 RLRWYGNMDNNNIFV 276


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 108 HFLLPTDKIYLKKYFYFEAIRTIL 37
           +FLLPT   + +    FEAIR IL
Sbjct: 815 YFLLPTVSRHYRPITIFEAIRKIL 838


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/19 (47%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -3

Query: 93  TDKIY-LKKYFYFEAIRTI 40
           T K Y LK+YFYF+++ ++
Sbjct: 374 TSKFYPLKQYFYFDSLESL 392


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 358 CSEIPLFYSISGTRDRYRWFSL 293
           CS  P FYS++G    Y+  +L
Sbjct: 40  CSPSPAFYSVNGEMKDYKLMAL 61


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 113 NVIFCYQRIKYI*KNIF 63
           ++IFCY  I+Y+  NIF
Sbjct: 459 SLIFCYVIIRYVKANIF 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,241
Number of Sequences: 5004
Number of extensions: 36848
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)