Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I10
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-5|CAB04273.2|  350|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z81527-5|CAB04273.2|  350|Caenorhabditis elegans Hypothetical
           protein F35E12.6 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 124 YNLYVTDTCNKFISHQTNTYLQNYYYSL*FITLFTFICNTCRSLQFRFLL 273
           YN+ V D+ N +     + Y+ NYY        FT IC+ C S+  + L+
Sbjct: 243 YNIMVLDSVNPY-----SGYMSNYYDDA--DAYFTVICDGCSSINIKTLI 285


>Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.8 protein.
          Length = 352

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 160 ISHQTNTYLQNYYYSL*FITLFTFIC 237
           I H TN+ +QNY YS   I +   IC
Sbjct: 133 IRHPTNSSIQNYIYSKHGIRILLTIC 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,005,401
Number of Sequences: 27780
Number of extensions: 201597
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)