Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I09
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   1.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.0  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   3.4  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   4.5  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    25   7.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   7.9  

>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 100 SKSLRFNPPSPHSVIDTDPQSAPIVSAN 17
           +++L   P SP S  + +P +APIVS N
Sbjct: 388 TETLTGKPSSPDSFTNANPTTAPIVSRN 415


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 304 VWAPAYFHPAPSYTLPLPPIKKEVP 230
           V  PA+  PAP    PLPP  + +P
Sbjct: 34  VSTPAFMEPAPVSKKPLPPPTRRLP 58


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 385 FKASGVGSLPLKSPMKAIPIDILL*PRVWAPAYFHPAPSY 266
           FK     S  L+S +  IP+ +LL   V+   ++HP P Y
Sbjct: 211 FKFIQQRSFYLRSLIYIIPLGVLLLIPVFIGRFYHPQPPY 250


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 148 SGEAVCCITTILTGDGSKSLRFNPPSPHSV 59
           SGE+V   +T LT   SKS+  +PPSP S+
Sbjct: 541 SGESVPTDST-LTDTKSKSVFVHPPSPQSL 569


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +3

Query: 159 DTDCVKIARAIRKYH----IEKLKFDDIGTSFLIGGNGKVYEGAGWKY-AGAHTRGYNKI 323
           D D V+   A+ K H     E  KF DIG +  +     VY+ A W +    HT     I
Sbjct: 72  DQDMVEKLVALGKKHRFLIFEDRKFADIGNTVKLQYASGVYKIASWAHITNCHTVPGEGI 131

Query: 324 SIGIAFIG 347
             G+  +G
Sbjct: 132 IQGLKEVG 139


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +3

Query: 153 HTDTDCVKIARAIRKYHIEKLKFDDIGTSFLIGGNG-KVYEGAGWKYAGAHTRGYNKISI 329
           H+D    +I   + +Y++ +  FD I    L    G K+ +        A TR YN  S 
Sbjct: 788 HSDV-VPEIIELMDEYYLNREDFDSITELVLPADAGEKLMKTIPTAAKSAFTRKYNSSSH 846

Query: 330 GIAFIG 347
            IAF G
Sbjct: 847 PIAFFG 852


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,143
Number of Sequences: 5004
Number of extensions: 56463
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)