Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I09
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    31   0.66 
10_01_0270 - 2876907-2877547,2877838-2878012                           29   2.7  
06_02_0324 + 14414422-14414541,14415271-14415347,14415807-144159...    29   3.5  
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270...    29   3.5  
03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570           29   3.5  
09_01_0093 - 1360596-1360625,1363562-1364266                           28   4.6  

>12_02_0228 + 15903452-15903812,15904153-15904202,15904615-15904713,
            15907146-15907415,15908045-15908125,15909033-15909599,
            15909677-15910053,15910326-15911613
          Length = 1030

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = -3

Query: 520  SQPSISF*SASPGLTVLVSXXXXXXXXXXXXRFCSTPHFSRSLTAFKASGVGSLPLKSPM 341
            S PS +F S++PG + + S               S+P F   LT+  A   GS P  SP 
Sbjct: 842  SSPSFAFGSSAPGSSPVFSLAVGSGTTSATPASASSPIFCNRLTSTNAPPFGS-PATSPF 900

Query: 340  KA 335
             +
Sbjct: 901  SS 902


>10_01_0270 - 2876907-2877547,2877838-2878012
          Length = 271

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 298 APAYFH-PAPSYTLPLPPI 245
           APA +H P PSYT P PP+
Sbjct: 177 APAAYHKPPPSYTHPAPPV 195



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 295 PAYFHPAPSYTLPLPPIKKEVPMSS 221
           P Y +P P+Y+ P P  K+ +P  S
Sbjct: 194 PVYSYPTPAYSHPTPVYKQPLPTPS 218


>06_02_0324 +
           14414422-14414541,14415271-14415347,14415807-14415994,
           14416276-14416373,14416633-14416766,14416852-14416953,
           14417931-14418038,14418335-14418465,14420068-14420142,
           14420439-14420518,14421229-14421320,14422333-14422634,
           14422717-14422856
          Length = 548

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 252 GNGKVYE---GAGWKYAGAHTRGYNKISIGIAFIGDFRGKLPTPEALNA 389
           G GK+Y    GAGW  +G +    +   +G   +  FR  L TP+  +A
Sbjct: 385 GKGKLYPQVMGAGWNESGENRAASSAQLVGWPPVRTFRKNLSTPKPADA 433


>04_04_1093 +
           30825722-30826168,30826457-30826608,30826926-30827048,
           30827240-30827384,30828032-30828093,30828373-30828586,
           30829671-30830585,30830827-30831076,30831164-30831432
          Length = 858

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 450 FGHRQLTSTVSPGDALQKEIEGWE 521
           +GH QL S   PG+    E++GW+
Sbjct: 588 YGHVQLVSITCPGECFVVEMKGWK 611


>03_02_0262 - 6944314-6944490,6944996-6945061,6945274-6945570
          Length = 179

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 298 APAYFHPAPSYTLPLPPIK 242
           +P + HP+P +  PLPPI+
Sbjct: 18  SPRHLHPSPRHLRPLPPIR 36


>09_01_0093 - 1360596-1360625,1363562-1364266
          Length = 244

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 183 RAIRKYHIEKLKFDDIGTSFLIGGNGKVYEGAGWKYAG 296
           + I+KY ++ +  D++GTS   GG G   +G+G K  G
Sbjct: 82  KVIQKYKVKVVAADEVGTSSSQGGKGTA-DGSGDKGDG 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,994,103
Number of Sequences: 37544
Number of extensions: 387484
Number of successful extensions: 1211
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)