Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I09
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    29   0.044
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    29   0.044
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.54 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.54 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.94 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 0.044
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = -2

Query: 440 FTTQKILLHATFQQIFDCVQSFRCRELTSEIPYESNPDRYFI 315
           F  ++++L    +++ + V ++ CR L + +P+ +N D  F+
Sbjct: 424 FFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFV 465


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 28.7 bits (61), Expect = 0.044
 Identities = 10/42 (23%), Positives = 25/42 (59%)
 Frame = -2

Query: 440 FTTQKILLHATFQQIFDCVQSFRCRELTSEIPYESNPDRYFI 315
           F  ++++L    +++ + V ++ CR L + +P+ +N D  F+
Sbjct: 392 FFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFV 433


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 VKIARAIRKYHIEKLKFDDIGTSFLI 248
           V++AR IR Y+ E  K D+     LI
Sbjct: 384 VEVARLIRNYYFESNKIDETTLKHLI 409


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 171 VKIARAIRKYHIEKLKFDDIGTSFLI 248
           V++AR IR Y+ E  K D+     LI
Sbjct: 384 VEVARLIRNYYFESNKIDETTLKHLI 409


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = -3

Query: 361 LPLKSPMKAIPIDILL*PRVWAP-AYFHPAP-SY--TLPLPPIKKEVPMSSNLSFSM 203
           L    P+K++ + I +  R+W P  YF+    SY  T+ +P     +    ++ +SM
Sbjct: 98  LSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSM 154


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 353 EIPYESNPDRYFIIATGVGSR 291
           +IP +  PDRY  +AT V +R
Sbjct: 31  DIPPDYLPDRYRSVATQVFNR 51


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 423 NLLSSKYNLFGHRQLTSTVSPG 488
           ++L   +  F H+QL S+ +PG
Sbjct: 4   SMLPKYHQQFHHQQLFSSANPG 25


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +2

Query: 446  SVWSSSTHQYSESG*CASER 505
            S W    H Y E   CA  R
Sbjct: 1680 STWDPRRHMYEELNHCAPNR 1699


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 399 LLKCGVEQNLLSSKYNLFGHRQLTSTV 479
           L   G+   +   ++ + GHRQ  ST+
Sbjct: 174 LQSVGISNEVELPQFRVLGHRQRHSTI 200


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,726
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)