Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I08
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    26   2.7  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   8.3  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    25   8.3  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    25   8.3  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   8.3  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    25   8.3  

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = +2

Query: 287 IVLFTKPNCDPCKKFETNFDNLHEDFKKHMNALSVKATNSHLARLYNPAKEPALVFFR 460
           +V F  P C  CK     ++ L E++    N +  K   +      + +  P ++FF+
Sbjct: 377 LVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDISVSISGFPTIMFFK 434


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 305 PNCDPCKKFETNFDNLHEDFKKHMNALSVKATNSHLARLYNPAKEPALVFFRHGIPLLY 481
           P+C  CK+    +DN+ E  K+      V+ +N H   + + +KE +       +P LY
Sbjct: 52  PSCGACKRLGPMWDNMVEKAKE-----QVEGSNFHFGEV-DCSKELSSCANIRAVPTLY 104


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 323 KKFETNFDNLHEDFKKHMNALSVKATNSHLARLYNPAKEPALVFFRH 463
           KK+ T+F+   +   K     S  AT+ ++  L N        F+RH
Sbjct: 189 KKWMTDFEEFQQAVTKDEGMSSEGATSGYMGSLVNSMSLMLEEFYRH 235


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 389 HLKHSCVS*NLHVSYQNLSRISYMDHNLVL*IKQ 288
           H+KH  ++  LH    ++ + S +DHN  + I++
Sbjct: 323 HIKHEGMAFQLHKKSNSILKSSNIDHNRSMPIRR 356


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
            Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = +2

Query: 314  DPCKK---FETNFDNLHEDFKKH 373
            DPC K   F+T + N+ E+ KKH
Sbjct: 1061 DPCMKLPRFKTEYLNVAEEVKKH 1083


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 296 FTKPNCDPCKKFETNFDNLHEDFKKHMNALSVKATN-SHLARLYNPAKEPALVFFRHGIP 472
           F  P   PCK+    FD   +D K  +  L ++A   S +A  ++    P  V   HG  
Sbjct: 27  FYAPWAAPCKQMNQVFDQFAKDTKNAV-FLKIEAEKFSDIAESFDVNAVPLFVLI-HGAK 84

Query: 473 LLYR 484
           +L R
Sbjct: 85  VLAR 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,188
Number of Sequences: 5004
Number of extensions: 32151
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)