Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I08
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1550 + 27641099-27641288,27641433-27641646,27641738-276418...    31   0.67 
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323...    28   3.6  
08_01_0044 + 301981-302826,302972-303580                               27   6.3  
02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005...    27   8.3  

>07_03_1550 +
           27641099-27641288,27641433-27641646,27641738-27641843,
           27642213-27642257,27642275-27642540,27642980-27642991,
           27643201-27643480,27643716-27643823,27644276-27644362,
           27644448-27644552,27644995-27645125,27645249-27645309
          Length = 534

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 290 VLFTKPNCDPCKKFETNFDNLHEDFKKHMNALSVK-ATNSHLARLYNPAKEPALVFFRH 463
           VL+T P C PC+  +     + +++ +H++ + +    +  +A        P + FF++
Sbjct: 452 VLYTSPTCGPCRTLKPILSKVIDEYNEHVHFVEIDIEEDPEIAEAAGIMGTPCVQFFKN 510


>05_01_0410 -
           3234455-3234466,3234851-3234950,3235037-3235161,
           3235244-3235400,3235644-3235735,3235828-3235855,
           3235949-3236066,3236411-3236466,3236556-3236653,
           3236864-3236948,3237428-3237600
          Length = 347

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = +2

Query: 287 IVLFTKPNCDPCKKFETNFDNLHEDFKKHMNALSVKA---TNSHLARLYNPAKEPALVFF 457
           +V F  P C  CKK    ++ L   FKK  + L  K     +  +   Y  +  P + +F
Sbjct: 51  LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWF 110

Query: 458 RHG 466
             G
Sbjct: 111 PKG 113


>08_01_0044 + 301981-302826,302972-303580
          Length = 484

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 356 EDFKKHMNALSVKATNSHLARLYNPAKE 439
           + F+K   A++V   NSH  + Y PA+E
Sbjct: 106 DHFRKVRKAVTVHLLNSHKVQAYRPARE 133


>02_05_0085 -
           25697860-25698142,25698631-25698946,25700481-25700518,
           25700955-25701036,25701815-25702016
          Length = 306

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 287 IVLFTKPNCDPCKKFETNFDNLHEDFKKHMNALSVKA-TNSHLARLYNPAKEPALVFFRH 463
           +V F    C PCK  +     L ++++  +N   +    N  +A  +     P ++ F++
Sbjct: 128 LVEFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDIATQFGIRSIPTMMIFKN 187

Query: 464 G 466
           G
Sbjct: 188 G 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,704,583
Number of Sequences: 37544
Number of extensions: 163431
Number of successful extensions: 288
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)