Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I08
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    29   1.9  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    29   1.9  
U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine rece...    27   5.7  
Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.        27   7.5  
U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.        27   7.5  
U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 317 PCKKFETNFDNLHEDFKKHMNAL 385
           P  KF TN D L E+FKK MN +
Sbjct: 705 PWIKFGTNIDLLSENFKKQMNEI 727


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 317 PCKKFETNFDNLHEDFKKHMNAL 385
           P  KF TN D L E+FKK MN +
Sbjct: 746 PWIKFGTNIDLLSENFKKQMNEI 768


>U88167-3|AAB42224.2|  363|Caenorhabditis elegans Hypothetical
           protein D2092.4 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 302 KPNCDPCKKFETNFDNLHEDFKKHMNALSVKATNSHLARLYNPAKEPALVFFRHGIPLLY 481
           K  C  C +  +  + + +D +       VK  +  +AR       P+LV++R   P+LY
Sbjct: 104 KVPCPTCTEALSEVEEIDDDIEATGYVQVVKTNDRSVARELGINVFPSLVYYRRKNPILY 163


>U70858-5|AAB09179.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein34 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 62  PSFIIWILVLFSI*LQSSIIYLFHIIYS*LSNLKMSSKICFLLLLVTY 205
           P F   +  L++I     +++   +I   ++ LKM+S IC  + L+TY
Sbjct: 40  PIFTATVASLYAIMASFELMFASPMIIFDINFLKMNSTICGAIYLITY 87


>Z78063-4|CAB01505.1|  685|Caenorhabditis elegans Hypothetical
           protein F45D3.5 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 350 LHEDFKKHMNALSVKATNSHLARLYNPAK 436
           +H DFKK +    + + N H+   YN A+
Sbjct: 419 VHRDFKKSVKLYQLASQNGHILAYYNLAQ 447


>U50829-1|AAC47113.1|  685|Caenorhabditis elegans SEL-1 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 350 LHEDFKKHMNALSVKATNSHLARLYNPAK 436
           +H DFKK +    + + N H+   YN A+
Sbjct: 419 VHRDFKKSVKLYQLASQNGHILAYYNLAQ 447


>U50828-1|AAC47112.1|  685|Caenorhabditis elegans sel-1 protein.
          Length = 685

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 350 LHEDFKKHMNALSVKATNSHLARLYNPAK 436
           +H DFKK +    + + N H+   YN A+
Sbjct: 419 VHRDFKKSVKLYQLASQNGHILAYYNLAQ 447


>U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical
           protein ZK563.2 protein.
          Length = 573

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 405 LLVALTLKAFMCFLKSSCKLSKFVSNFLHGSQF 307
           L++A+T   F+C L++SCK  +F+   LH   F
Sbjct: 479 LIIAITC-CFICVLQNSCK--EFLPKILHNWSF 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,077,693
Number of Sequences: 27780
Number of extensions: 173034
Number of successful extensions: 503
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)