Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I06
(376 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 66 1e-12
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f... 29 0.31
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 28 0.42
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 28 0.42
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ... 27 0.73
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 1.7
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 26 2.2
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 25 3.9
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 3.9
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 5.1
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 24 6.8
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe... 24 9.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 24 9.0
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 66.5 bits (155), Expect = 1e-12
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 VYLCHVIGPRSCGKTSICRSFLGIAHKRIKPHANERGDSNSTDGGCVNTVLVYGQEKYLV 180
V+LC V+G +SCGKT++ SF+ R+ P+ VN+V ++YLV
Sbjct: 421 VFLCFVVGSKSCGKTALLSSFINNNTNRLTPNT------------VVNSVEFQSTQRYLV 468
Query: 181 LREIPITRASDPLQPHEVN-CDVACLVYDGGAARSFEYIARIYIKYFAESHIPVLIVGTR 357
L EI T +P + CD+ CL+YD SF +IA + Y IP + T+
Sbjct: 469 LSEIGETDLDILAEPKSLEACDILCLLYDSSNPNSFSFIANLLNLYPDLQKIPCVFAATK 528
Query: 358 GD 363
D
Sbjct: 529 AD 530
>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
factor complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 28.7 bits (61), Expect = 0.31
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 16 VIGPRSCGKTSICRSFLGIAHKR 84
+IGPRSCGKTS+ + A K+
Sbjct: 111 LIGPRSCGKTSVLKILESYALKQ 133
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 28.3 bits (60), Expect = 0.42
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 245 TSQFTSCGCSGSDARVIGISLSTRYFSCP 159
T+ F G SGS A ++GIS + +CP
Sbjct: 344 TAGFCDSGASGSSASILGISFPSLCRTCP 372
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 28.3 bits (60), Expect = 0.42
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +1
Query: 16 VIGPRSCGKTSICRSF-LGIAHKRIKPHANERGDSN-STDGGCVNTVL--VYGQEKYLVL 183
V+G +CGKTS+ F LG P E S+ DG V L GQE+Y L
Sbjct: 13 VVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYERL 72
Query: 184 REIPITRA 207
R + +A
Sbjct: 73 RPMSYAKA 80
>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 27.5 bits (58), Expect = 0.73
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 154 VYGQEKYLVLREIPITRASDPLQPHEVNCDVACLV 258
+YG+E L RE+ + +SD + NCDVA LV
Sbjct: 48 LYGKEVILADREM-VESSSDEILKDADNCDVAMLV 81
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 1.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 16 VIGPRSCGKTSICRSFLGIAHKRI 87
++G CGKT++C+ HK +
Sbjct: 1191 LVGDTGCGKTTVCQILAECLHKEL 1214
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 2.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -3
Query: 314 YFMYILAMYSKERAAPPSYTRQATSQFTSCGCSGSDARVIGISL 183
+++Y+L E P + T++ TSC S + A + I L
Sbjct: 202 WYLYVLCTSEGEVLLPQKWLASKTARGTSCALSSAVASNLAIGL 245
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 25.0 bits (52), Expect = 3.9
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 16 VIGPRSCGKTSICRSFLG 69
V+G +SCGK+S+ + +G
Sbjct: 31 VVGSQSCGKSSVLENIVG 48
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 3.9
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 169 KYLVLREIPITRASDPLQPHEVN 237
KY+ R + ++RA+ ++P+EVN
Sbjct: 93 KYIGSRPVKLSRATSDVKPNEVN 115
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 5.1
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -3
Query: 218 SGSDARVIGISLSTRYFSCPYTSTVLTHPPS 126
S S+AR +GI+ +RY S +S VL+ PPS
Sbjct: 378 SASEARKLGINAQSRYAS--ISSAVLS-PPS 405
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 24.2 bits (50), Expect = 6.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 246 DVAVHLVRLQRVRRAGYRYLPQH*ILL 166
D+ VH+ L+ RA YL QH +LL
Sbjct: 1388 DIIVHVANLELYYRALNFYLEQHPMLL 1414
>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 230 SCGCSGSDARVIGISLSTRYF 168
+CGC ARVIG+ L ++
Sbjct: 197 ACGCIAMAARVIGMKLPKDWY 217
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.8 bits (49), Expect = 9.0
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = -3
Query: 341 STGMWLSAKYFMYILAMYSKERAAPPSYTRQATSQFTSCGCSGSDARV----IGISLSTR 174
+ G + AK+ + L + A PPS +Q+T Q ++ + IG+ L
Sbjct: 929 ANGDFYLAKFSILTLIEFLPSFAPPPSNDKQSTPQVSNSAAGKMELNFKIHKIGLRLLEN 988
Query: 173 YFSCPYTSTVLTHPPSV 123
Y S P +L SV
Sbjct: 989 YESKPICIDLLALDLSV 1005
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,366,180
Number of Sequences: 5004
Number of extensions: 23375
Number of successful extensions: 73
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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