Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I06
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160... 54 5e-08
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162... 38 0.002
04_03_0761 + 19339944-19340311,19342544-19343084 29 1.2
06_03_1387 - 29820358-29821035 29 1.6
10_07_0112 - 12986547-12988502 28 2.1
08_02_0828 - 21596570-21597337 28 2.1
09_02_0222 + 5968232-5968467,5970811-5971187,5972216-5972256,597... 28 2.7
07_01_0620 - 4600046-4600288 28 2.7
11_03_0120 - 10255303-10255518,10256490-10256582,10256774-102568... 27 3.6
08_01_1015 - 10278480-10278992 27 3.6
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 27 4.8
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 27 4.8
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 27 4.8
08_01_0312 + 2764744-2767390,2767632-2767990 27 6.3
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 26 8.4
06_01_1045 - 8241862-8242881 26 8.4
04_04_1108 + 30961600-30962013,30963131-30964465 26 8.4
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 26 8.4
01_06_1692 - 39232475-39232867,39233176-39233310,39233770-392339... 26 8.4
>03_06_0407 -
33714563-33714636,33714966-33715152,33715943-33716093,
33716520-33716632,33717022-33717085,33717180-33717391,
33717540-33717621,33717811-33717866,33718004-33718072,
33718524-33718772,33718873-33719049,33719556-33719702,
33719794-33719926,33720093-33720307
Length = 642
Score = 53.6 bits (123), Expect = 5e-08
Identities = 42/128 (32%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Frame = +1
Query: 1 VYLCHVIGPRSCGKTSICRSFLGIAHKRIKPHANERGDSNSTDGGCVNTVLVYGQEKYLV 180
V+ C+V GPR GKT++ +SFLG P ER NTV + G K LV
Sbjct: 424 VFQCYVFGPRGAGKTALLQSFLGRQPSDALPMNGER--------FAANTVELSGSRKTLV 475
Query: 181 LREIPITRASDPLQPHE--VNCDVACLVYDGGAARSFEYIARIYIKYFAES-----HIPV 339
REIP L E CDVA VYD S++ + ++ +P
Sbjct: 476 FREIPEDDVRPLLADRESLAPCDVAVFVYDSCDEFSWQRTRDLLVEVATHGENTGYEVPC 535
Query: 340 LIVGTRGD 363
LIV + D
Sbjct: 536 LIVAAKDD 543
>01_06_1314 +
36215607-36215734,36215911-36216043,36216135-36216281,
36217172-36217348,36217469-36217717,36217917-36217964,
36218364-36218419,36218639-36218720,36219260-36219515,
36219563-36219629,36219688-36219724,36219918-36220030,
36220838-36220988,36221352-36221538,36221768-36221841
Length = 634
Score = 38.3 bits (85), Expect = 0.002
Identities = 41/148 (27%), Positives = 61/148 (41%), Gaps = 27/148 (18%)
Frame = +1
Query: 1 VYLCHVIGPRSCGKTSICRSFLGIAHKRI------KPHANER----GDSNSTDGGCVNTV 150
V+ C+V GPR GKT++ +SFL H + H N N+ +N +
Sbjct: 388 VFQCYVFGPRHAGKTALLQSFLKRYHSIVFYIMNFVCHGNLPMLLLSMVNNLQQILLNCL 447
Query: 151 L----------VYGQEKYLVLREIPITRASDPLQPHE--VNCDVACLVYDGGAARSFEYI 294
+ V+G K LV+REI L E CDVA +VYD G S++
Sbjct: 448 IFILNSATFTHVFGTRKTLVMREISEGDVGPLLSDKESLAPCDVAVIVYDSGDEVSWQRA 507
Query: 295 ARIYIKYFAES-----HIPVLIVGTRGD 363
+ ++ +P LIV + D
Sbjct: 508 RELLVQVATRGKNTGYEVPCLIVAAKDD 535
>04_03_0761 + 19339944-19340311,19342544-19343084
Length = 302
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = -3
Query: 299 LAMYSKERA---APPSYTRQATSQFTSCGCSGSDARVIGISLSTRYFSCPYTSTVLTH 135
LA+ K++ PP T+Q T F G +G+ A V+G S S R + + + H
Sbjct: 42 LAVQQKQKQPALVPPPPTQQQTQGFGGVGGAGAAALVVGSSSSARGMAAAAAAEWMAH 99
>06_03_1387 - 29820358-29821035
Length = 225
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 247 ACLVYDGGAARSFEYIARIY--IKYFAESHIPVLIVGTRGD 363
A LVYD + RSF + AR ++ A++ I V+++G + D
Sbjct: 83 AMLVYDVTSRRSFHHAARWLHDLRAHADNSIVVMLIGNKAD 123
>10_07_0112 - 12986547-12988502
Length = 651
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 326 LSAKYFMYILAMYSKERAAPPSYTRQATSQFTSCGCSGSDARVIGISLS 180
L+A Y + A + R +PPS R A + +S S +A + +SLS
Sbjct: 46 LAAAYALSTTATATDARTSPPSPLRHALALLSSLPASAYNAAIRALSLS 94
>08_02_0828 - 21596570-21597337
Length = 255
Score = 28.3 bits (60), Expect = 2.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 224 GCSGSDARVIGISLSTRYFSCPYTSTVLTHPPSVL 120
G S S +R + + S + S P+T TV+ PP++L
Sbjct: 193 GKSNSTSRTMKTTTSAQMISKPHTETVVKPPPALL 227
>09_02_0222 +
5968232-5968467,5970811-5971187,5972216-5972256,
5972808-5972843
Length = 229
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +1
Query: 247 ACLVYDGGAARSFEYIARIY--IKYFAESHIPVLIVGTRGD 363
A LVYD +SF+++AR ++ A+ +I ++++G + D
Sbjct: 94 AMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSD 134
>07_01_0620 - 4600046-4600288
Length = 80
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 197 IGISLSTRYFS-CPYTSTVLTHPPSVLLLSPRSFA 96
+G+ ++ R+ S CP T+ + HPP SP S A
Sbjct: 10 MGVRIAARFHSHCPQTARMYYHPPPSSSSSPSSSA 44
>11_03_0120 -
10255303-10255518,10256490-10256582,10256774-10256872,
10258145-10258264,10258345-10258467,10259933-10260046,
10261173-10261361,10263100-10263266,10263829-10263913,
10264176-10264370,10266251-10266436,10266575-10266614,
10267899-10267966
Length = 564
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 115 SNSTDGGCVNTVLVYGQEKYLVLREIPITRASDPLQPHEVNCDVACLV 258
SN +G + L + L+L +IP T+ DP+Q + + CL+
Sbjct: 412 SNGENGWPIADTLAECLKAVLLLSKIPPTQVGDPIQEQRLYDAIDCLL 459
>08_01_1015 - 10278480-10278992
Length = 170
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -2
Query: 285 EGASRAAVVHETGDVAVHLVRLQRVRRAGYRYLPQH*ILLLP 160
EGA V+H G H++ LQR RRA P H +LL+P
Sbjct: 71 EGARAPPVLHRDG--VQHVLVLQRRRRADVGPRPGH-VLLVP 109
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 27.1 bits (57), Expect = 4.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 16 VIGPRSCGKTSICRSFLGIAHKRIK 90
++GP CGKT++ ++ G +K +K
Sbjct: 36 LLGPPGCGKTTLLKALAGRLNKSLK 60
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 275 AAPPSYTRQATSQFTSCGCSGSDARVIGISLSTRY 171
A+P SY + +C SGS A + +S TR+
Sbjct: 18 ASPLSYDLRLRPDLAACAFSGSAAVAVAVSAPTRF 52
>03_02_0473 +
8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Frame = -3
Query: 368 SASPLVPTISTGMWLSAKYFMYILAMYSKERAAPPSYTRQAT-----SQFTSCGCSGS-D 207
SA L + +W + Y + Y+ E A PP+ +R T ++ C SGS +
Sbjct: 702 SAMALQRLVQAAVWFLGENANYAASEYAWESATPPASSRNPTLASALTRLQRCAFSGSWE 761
Query: 206 ARVIGISLST 177
R+ + T
Sbjct: 762 IRIAAVQALT 771
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 26.6 bits (56), Expect = 6.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 221 CSGSDARVIGISLSTRYFS---CPYTSTVLTHPPSVLLLSPRSFACGFILL*AIPRKLLQ 51
C G+ V+G+ LS R S P + +L+ + L LS +FA + R+L+
Sbjct: 74 CDGATGEVVGVDLSRRNLSGTVSPTAARLLSPTLTSLNLSGNAFAGELPPAVLLLRRLVA 133
Query: 50 IDV 42
+DV
Sbjct: 134 LDV 136
>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +1
Query: 112 DSNSTDGGCVNTVLVYGQEKYLVLREIPITRASDPLQPHEVNCDVACLVYDGGAARS 282
D+ G C N + Y Q+ + T+++ L P ++ + Y G AAR+
Sbjct: 1612 DAPQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAART 1668
>06_01_1045 - 8241862-8242881
Length = 339
Score = 26.2 bits (55), Expect = 8.4
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Frame = +1
Query: 232 VNCDVACLVYD---G--GAARSFEYIA-RIYI-KYFAESHIPVLIVGTRGDAL 369
++CD ACL+YD G AR E +A + I + F +PV +VG GD +
Sbjct: 213 LHCDFACLLYDLLRGKLDEARVREIVADAVDIEREFVCDALPVALVGMNGDLM 265
>04_04_1108 + 30961600-30962013,30963131-30964465
Length = 582
Score = 26.2 bits (55), Expect = 8.4
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -3
Query: 275 AAPPSYTRQATSQFTSCGCSGSDARVIGISLSTRYFSCPYTSTVLTHPP 129
A P T A + T C G A V+ + FSCP + PP
Sbjct: 64 AVPAPATATAAAPPTRVSCGGC-AAVLSVPHGPGRFSCPLCGAEIAPPP 111
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 26.2 bits (55), Expect = 8.4
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Frame = -2
Query: 261 VHETG-DVAVHLVRLQRVRRAGYRYLPQH------*ILLLPVHQH-RVNAPAVCA 121
+H G DVA+ R+Q + + Y + QH ++ +P H+H R+ A +CA
Sbjct: 1530 IHIQGWDVAIFEARMQAMSKPTYTAITQHAKHGKPALVFVPTHKHARLTAVDLCA 1584
>01_06_1692 -
39232475-39232867,39233176-39233310,39233770-39233916,
39234131-39234303,39235201-39235288,39235508-39235725,
39235968-39236025,39236259-39236315,39237022-39237099
Length = 448
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 34 CGKTSICRSFLGIAHKRIKPHANERGDSN 120
CG T CR F A K+ K + G+ N
Sbjct: 52 CGSTFHCRYFSSKAKKKTKSSGTDSGEEN 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,700,916
Number of Sequences: 37544
Number of extensions: 175859
Number of successful extensions: 543
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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