Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I06
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67951-4|AAB07572.1|  398|Caenorhabditis elegans Hypothetical pr...    61   3e-10
U70855-4|AAB09163.1|  625|Caenorhabditis elegans Hypothetical pr...    60   4e-10
AC024791-26|AAK29889.1|  421|Caenorhabditis elegans Hypothetical...    56   8e-09
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    32   0.12 
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    32   0.12 
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    30   0.62 
Z22178-5|CAA80155.1|  207|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AL117204-37|CAB55148.2|  248|Caenorhabditis elegans Hypothetical...    28   2.5  
Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z82272-4|CAB05221.1|  342|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily ass...    27   5.8  
AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical...    27   5.8  
U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf (tbp-associ...    26   7.6  

>U67951-4|AAB07572.1|  398|Caenorhabditis elegans Hypothetical
           protein C47C12.4 protein.
          Length = 398

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 37/119 (31%), Positives = 57/119 (47%)
 Frame = +1

Query: 1   VYLCHVIGPRSCGKTSICRSFLGIAHKRIKPHANERGDSNSTDGGCVNTVLVYGQEKYLV 180
           V+ C V+G +  GKT   +S  G    R      + G  +S     +N V V  + KYL+
Sbjct: 198 VFQCLVVGAKDAGKTVFTQSLAG----RGMADVAQIGRRHSPF--VINRVRVKEESKYLL 251

Query: 181 LREIPITRASDPLQPHEVNCDVACLVYDGGAARSFEYIARIYIKYFAESHIPVLIVGTR 357
           LRE+ +    D L   E + DV   +YD     SF + A +Y KYF  +  P +++ T+
Sbjct: 252 LREVDVLSPQDALGSGETSADVVAFLYDVSNPDSFAFCATVYQKYFYRTKTPCVMIATK 310


>U70855-4|AAB09163.1|  625|Caenorhabditis elegans Hypothetical
           protein K08F11.5 protein.
          Length = 625

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 37/119 (31%), Positives = 57/119 (47%)
 Frame = +1

Query: 1   VYLCHVIGPRSCGKTSICRSFLGIAHKRIKPHANERGDSNSTDGGCVNTVLVYGQEKYLV 180
           V+ C V+G +  GKT   +S  G    R      + G  +S     +N V V  + KYL+
Sbjct: 426 VFQCLVVGAKDAGKTVFMQSLAG----RGMADVAQIGRRHSPF--VINRVRVKEESKYLL 479

Query: 181 LREIPITRASDPLQPHEVNCDVACLVYDGGAARSFEYIARIYIKYFAESHIPVLIVGTR 357
           LRE+ +    D L   E + DV   +YD     SF + A +Y KYF  +  P +++ T+
Sbjct: 480 LREVDVLSPQDALGSGETSADVVAFLYDISNPDSFAFCATVYQKYFYRTKTPCVMIATK 538


>AC024791-26|AAK29889.1|  421|Caenorhabditis elegans Hypothetical
           protein Y47G6A.27 protein.
          Length = 421

 Score = 56.0 bits (129), Expect = 8e-09
 Identities = 36/119 (30%), Positives = 57/119 (47%)
 Frame = +1

Query: 1   VYLCHVIGPRSCGKTSICRSFLGIAHKRIKPHANERGDSNSTDGGCVNTVLVYGQEKYLV 180
           V+ C V+G +  GKT   +S  G    R      + G  +S     +N V V  + KYL+
Sbjct: 223 VFQCLVVGAKDAGKTVFMQSLAG----RGMADVAQIGRRHSPF--VINRVRVKEESKYLL 276

Query: 181 LREIPITRASDPLQPHEVNCDVACLVYDGGAARSFEYIARIYIKYFAESHIPVLIVGTR 357
           LRE+ +    D L   E +  V   +YD   + SF + A +Y KYF  +  P +++ T+
Sbjct: 277 LREVDVLSPQDALGSGETSAAVVAFLYD--VSNSFAFCATVYQKYFYRTKTPCVMIATK 333


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +1

Query: 52  CRSFLGIAHKRIK------PHANERGDSNSTDGGCVNTVLVYGQEK 171
           C++ L +  KR+K         NE GD  + D G VN+  V+G ++
Sbjct: 813 CKTILALIEKRVKNPPGIMQQPNENGDKGAADEGHVNSAFVFGDDQ 858


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
 Frame = +1

Query: 52  CRSFLGIAHKRIK------PHANERGDSNSTDGGCVNTVLVYGQEK 171
           C++ L +  KR+K         NE GD  + D G VN+  V+G ++
Sbjct: 813 CKTILALIEKRVKNPPGIMQQPNENGDKGAADEGHVNSAFVFGDDQ 858


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 4    YLCHVIGPRSCGKTSICRSFLGIAHKRIK 90
            +L  ++GPR+CGK S+  +   +  KR++
Sbjct: 1659 WLALLVGPRNCGKRSVIENVANLCGKRLR 1687


>Z22178-5|CAA80155.1|  207|Caenorhabditis elegans Hypothetical
           protein F54C8.5 protein.
          Length = 207

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 253 LVYDGGAARSFEYIARIY---IKYFAESHIPVLIVGTRGD 363
           LVY     +SFE  + IY   ++ + ++ IP++IVG + D
Sbjct: 90  LVYAIDDRKSFEMCSNIYEKIVRTYGDTSIPIVIVGNKTD 129


>AL117204-37|CAB55148.2|  248|Caenorhabditis elegans Hypothetical
           protein Y116A8C.10b protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 265 GGAARSFEYIARIYIKYFAES-HIPVLIVGTRGD 363
           G A +S +  A + +K   ES +IPVLIVGT+ D
Sbjct: 121 GAAPKSSKDPAAVALKVDIESCNIPVLIVGTKAD 154


>Z11115-2|CAA77450.1|  599|Caenorhabditis elegans Hypothetical
           protein ZK637.3 protein.
          Length = 599

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 61  FLGIAHKRIKPHANERGDSNSTDGGCVNTVLVYG 162
           F G+   R  P +NE G S S  G C +  +  G
Sbjct: 431 FTGVCSDRCNPKSNEIGSSISMTGACASFSMTDG 464


>Z82272-4|CAB05221.1|  342|Caenorhabditis elegans Hypothetical
           protein F55G11.7 protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 196 ITRASDPLQPHEVNCDVACLVYDGGAARSFEYIARIYIKY 315
           +T  + P+ P       + LV+DG    SF YI+ +Y  Y
Sbjct: 168 LTLMAFPVNPKNYYSLRSTLVFDGHDCTSFNYISNLYQLY 207


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 109 GDSNSTDGGCVNTVLVYGQEKYLVLREIPITRAS 210
           G S ST   C+N +++ GQ  Y       ITR S
Sbjct: 623 GTSGSTGTACINPIIMNGQITYSQGNTYDITRPS 656



 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 109 GDSNSTDGGCVNTVLVYGQEKYLVLREIPITRAS 210
           G S ST   C+N +++ GQ  Y       ITR S
Sbjct: 764 GTSGSTGTACINPIIMNGQITYSQGNTYDITRPS 797


>U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 312 protein.
          Length = 656

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 241 DVACLVYDGGAARSFEYIARIY--IKYFAESHIPVLIVGTRGDALIA 375
           D A LVYD  A +SF  +      IK   E  IP+++VG + D  I+
Sbjct: 535 DGAILVYDVCAEQSFLRVRDWIETIKESTERSIPIILVGNKVDMRIS 581


>AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical
           protein B0205.6 protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 91  PHANERGDSNSTDGGCVNTVLVY--GQEKYLVLREIPITRAS 210
           PH    GD+     GCVN    Y  G+   + L+ I ++  S
Sbjct: 293 PHIIRNGDARHAYPGCVNLSFAYVEGESLLMALKSIALSSGS 334


>U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 11.1
           protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 166 EKYLVLREIPITRASDPLQPHEV 234
           E+ L +R+I    AS+PLQPH +
Sbjct: 298 EEALDIRDINEEEASNPLQPHHI 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,690,271
Number of Sequences: 27780
Number of extensions: 134408
Number of successful extensions: 385
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)