Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I05
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.35 
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   1.1  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    28   1.1  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    27   1.9  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    27   1.9  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    26   3.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   3.3  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   4.3  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   5.7  
SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr 1...    25   7.5  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   7.5  
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    25   7.5  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   10.0 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   10.0 
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   10.0 

>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 105

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 182 FITVSNVYFISQFEINSFNRSYFLI*VSEYCFSYVV 75
           F+  S    IS  ++N   R Y+ I    YCF Y++
Sbjct: 4   FVFESLCAMISTLKVNKIERGYWFIQCLRYCFIYII 39


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = -2

Query: 440 MEWTVLCQFLIKFVFPTSLKVNCIYENTLCATVQRTRIHQIFDTFIGVVFNPSINNVSCF 261
           M   ++  F+  FV  T      ++ + L     R   + I+D F+G   NP +  +  F
Sbjct: 151 MSVAIITAFVCTFVLYTG---TLLFGDRLFDKPHRLSGNPIYDAFMGACLNPRLGKLLDF 207

Query: 260 FIFTEI*VLHFRIKHIS 210
            +F E+ +  F +  IS
Sbjct: 208 KMFFEVRIPWFILFFIS 224


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/82 (25%), Positives = 43/82 (52%)
 Frame = +3

Query: 183 LNDQFAVVSRDVFNSEVQNLNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCV 362
           L D   VV R V  +E  +++ G N   +  + +    +T+K+++ LV  SS+  + + +
Sbjct: 322 LGDNSLVVIRAVDLAEQIHVS-GINSFESKYLTSTGPKNTSKQLQGLVQFSSVSPNGELL 380

Query: 363 LVNAIYFKGSWKDKFDKELTQD 428
           L+++  F G      + +LT+D
Sbjct: 381 LMSSSSFNGHSVSVQEYDLTKD 402


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = +3

Query: 240 LNFGKNEEAANIINTWVEDHTNKRIKNLVDPSSLDSSTQCVLVNAIYFKGSWKDKFDKEL 419
           L FG NE     +   +E    K    L DP SL   T    ++ I F G+   K   +L
Sbjct: 219 LGFGANEAYRRYLGLLIESENGKVGNTLSDPCSLRGRTYD--IDGIEFAGTGDLKQCLKL 276

Query: 420 TQDRPFHVNKDK 455
           T +    +NKDK
Sbjct: 277 TYNL---LNKDK 285


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
 Frame = -2

Query: 449 FVNMEWTVLCQFLIKFVFPTSLKVNCIYENTLCATVQRTRIHQIFDTFIG---VVFNPSI 279
           +V+ EW V+   +  +     L +   Y     AT +  ++H++    I    ++ +  +
Sbjct: 488 YVDSEWEVVPHNIASYTTIKELGIGA-YGQVKLATYKSNKVHEVILKSISKSRILLDSWM 546

Query: 278 NNVSCFFIFTEI*VLHFRIKHISGHNSKLII*FITVSNVYFISQ 147
            +     +  EI +LHF   H   +  K+I  F    N Y +++
Sbjct: 547 RDKDLGTVPMEISILHFLKAHSHPNIVKMITFFEDNENYYLLTE 590


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 233 HFRIKHISGHNSKLII*FI 177
           HF + H+ GH SKL   F+
Sbjct: 72  HFHVSHVPGHASKLYFAFL 90


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 268 AASSFLPKFKFCTSELNTSLDTTAN*SFNSLPLAMYTLLASLRSTPLIDLT 116
           A  +FL  F FC + +N SLD        +    +YTL+  L   P + +T
Sbjct: 289 ARLNFL-SFSFCVNPMNQSLDCNTTPHRRNASSIIYTLMYYLIIAPTLLIT 338


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +3

Query: 72  NDNVTKAVFTDLNQKVRSIKGVDLKLANKVYIANGNELNDQFAVVSRDVFNSEVQNL 242
           ND + +A  +DL QK+         L N ++    ++  D+F+   R   +  + NL
Sbjct: 546 NDYIAQAGLSDLLQKIADTTDDKQALKNYLHSWKWDQQIDKFSTFIRKTLSETIDNL 602


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +3

Query: 171 NGNELNDQFAVVSRDVFNSEVQNLNFGKNE----EAANIINTWVEDHTNKR 311
           NG ++ D   VV   VF  + QN    KNE    EA+    T V D T  +
Sbjct: 279 NGKQVGDLTLVVKSAVFREDKQNDENEKNENEPIEASESAPTNVSDSTEPK 329


>SPAC4F8.07c |hxk2||hexokinase 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = -2

Query: 386 LKVNCIYENTLCATVQRTRIHQIFDTFIGVVFNPSIN 276
           +++  +  +T+   V R    +  DTF+G++F    N
Sbjct: 189 IRIEAVINDTVGTLVTRAYTSKESDTFMGIIFGTGTN 225


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 250 VKMKKQLTLLILGLKTTPINVS 315
           + + +QLT+L+ G+ +TPI V+
Sbjct: 77  ISIYQQLTILLFGVLSTPITVN 98


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 286 GLKTTPINVSKIWWILVRWTVAHSVF 363
           GL    + ++K WW ++ WTV ++ F
Sbjct: 188 GLNGKKMYITK-WWDMINWTVVNNRF 212


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 273 IINTWVEDHTNKRIKNLVDPSSLDSSTQCVLVNAIYF 383
           +++ W  D  ++  + +   S +DSS+QC+    + F
Sbjct: 316 LVHIWEPDMFSRPSETICLSSQVDSSSQCIPATCLSF 352


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 348 YCPTN*DPPNF*YVYWCGLQPK 283
           YC +N    +  Y+ WCG Q K
Sbjct: 245 YCQSNQTETSLHYLCWCGKQEK 266


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 156 KVYIANGNELNDQFAVVSRDVFNSEVQNLNF 248
           K+ +   N+L ++  VV RD+ N ++  L+F
Sbjct: 102 KILLWKFNDLEEESEVVYRDISNQQIFALHF 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,127
Number of Sequences: 5004
Number of extensions: 45655
Number of successful extensions: 154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)