Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I04
(504 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 29 0.30
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 0.92
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.2
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 1.6
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 26 3.7
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 25 6.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 8.5
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 8.5
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 25 8.5
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 8.5
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.5 bits (63), Expect = 0.30
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +1
Query: 313 GKPKNIDDANEDTIKRVCKDYHERIGKLEDEKFDLEYIVKRKDMEISDLNSQVNDL 480
G ID++ +++KR Y ++ ++ LE ++R + EISD +++ L
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESL 892
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.9 bits (59), Expect = 0.92
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 373 YHERIGKLEDEKFDLEYIVKRKDMEISDLNSQV 471
+HE I KL+D + +L +++K++ IS L V
Sbjct: 599 FHESINKLQDREKELTSNLEKKNLVISSLRETV 631
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 301 EDRCGKPKNIDDANEDTIKRVCKDYHERIGKLEDEKFDLEYIVKRKDMEISDLNSQVNDL 480
ED+ KP N +T + +LE + L + ++KD +I +L ++NDL
Sbjct: 118 EDKAAKPDGEIKKNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKERINDL 177
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 1.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 374 TTNASVNSKMKSSIWNTSLKGKIWR 448
TT N+ +KSS+W LK K W+
Sbjct: 589 TTCHDGNNSLKSSVWKELLKEKHWK 613
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.8 bits (54), Expect = 3.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 322 KNIDDANEDTIKRVCKDYHERIGKLEDEKFDLEYIVKRKD 441
+NI D++ED I ++ Y + DE+ E+ + KD
Sbjct: 435 ENIVDSSEDIINQIASQYMDDRAFETDEEESTEFQITTKD 474
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 6.5
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 391 KLEDEKFDLE-YIVKRKDME-ISDLNSQVNDLRGKFV 495
+LEDEKFD E Y+ D E I ++ + D G+F+
Sbjct: 206 QLEDEKFDAEHYMADFYDREMIDEILHYIPDYIGEFL 242
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 82 VFFHHPPLWLC*FTVSVRKRRWPYKMV 2
V FHHP WL + +S R YK++
Sbjct: 705 VSFHHPLHWLLVYLLSFYVERDNYKLL 731
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 8.5
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 33 TDTVNQHNHNGG**KKTSRGGEEGQTGRN*PQACRSAQAYGGSFQSEESQERFHDTR 203
TD+ N HN + TS ++G T RN +++ + QS S E H +R
Sbjct: 452 TDSANGHNPSNHANPSTSTTNDQGATLRN--------ESFNAASQSNLSSEHGHSSR 500
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 24.6 bits (51), Expect = 8.5
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 337 ANEDTIKRVCKDYHERIGKLEDEKFDLEYIVKRKDM 444
+NED +K K+Y + IGK+ + K +E + KR D+
Sbjct: 577 SNED-LKSALKEYGDSIGKVFNRKDAIERL-KRHDI 610
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 355 KRVCKDYHERIGKLEDEKFDLEYIVKRKDMEISDLNSQVNDL 480
+R+C+ + + + + +DL++ E S L+ QVNDL
Sbjct: 897 QRLCEGRTKELLNSQQKLYDLKHSYSSVMTEKSKLSDQVNDL 938
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,945
Number of Sequences: 5004
Number of extensions: 28140
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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