Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I04
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 29 2.1
09_01_0102 + 1582793-1582898,1582988-1583093,1584115-1584172,158... 29 2.8
02_01_0299 + 2001938-2002510,2002821-2003033,2003129-2003333,200... 28 3.7
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990... 28 4.9
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472... 28 4.9
06_03_0545 + 21983666-21986086 28 4.9
09_06_0296 - 22104796-22104916,22104967-22105022,22105094-221051... 27 6.5
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 27 6.5
02_01_0558 + 4109929-4110042,4110989-4111097,4111404-4111563,411... 27 8.6
>02_01_0459 +
3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 334 DANEDTIKRVCKDYHERIGKLEDEKFDLEYIVKRKDMEISDLNSQVNDL 480
D ED K++ K + L D+K +E I+ K E+ ++S+VNDL
Sbjct: 99 DEKEDHEKQL-KQIRLDMEALRDDKTQMEVILDEKIDEVRKISSKVNDL 146
>09_01_0102 +
1582793-1582898,1582988-1583093,1584115-1584172,
1584676-1584745,1585132-1585197,1586374-1586429,
1587992-1588078,1588819-1589139,1589827-1589946,
1590747-1590881,1591529-1591605,1591681-1591756,
1592800-1592874,1592971-1593075,1593299-1593374,
1594482-1594617,1594702-1594804,1595186-1595298,
1596907-1597111,1597173-1597301,1597403-1597517,
1597710-1597795,1599108-1599203,1599615-1599751,
1600374-1600476,1601809-1601888,1602013-1602091,
1602241-1602298,1602489-1602586,1602673-1602767,
1602861-1602918
Length = 1074
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 358 RVCKDYHERIGKLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGK 489
R+C E+I ++E E D+E I+ ++ ++ N + D+ K
Sbjct: 649 RLCTSLGEKIAEMESEIADMERIISQRTRDMKKPNDKREDIELK 692
>02_01_0299 +
2001938-2002510,2002821-2003033,2003129-2003333,
2003485-2003560,2003665-2003800,2003905-2004009,
2004095-2004172,2004264-2004353,2004441-2004506,
2004836-2004892,2004996-2005073,2005165-2005212,
2005330-2005401
Length = 598
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 145 CALRHACGQFRPVWPSSPPRDVFFHH 68
C +R FRPV P PP D F H
Sbjct: 400 CRVRVPFSDFRPVNPQDPPLDPFLVH 425
>12_01_0977 -
9900073-9900521,9900594-9900698,9900770-9900959,
9901035-9901093,9901297-9901688,9901770-9902059,
9902146-9903030
Length = 789
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 355 KRVCKDYHERIGKLEDEKFDLEYIVKRKDMEISDLNSQVNDLR 483
K+ K+ ERI +L+D ++L K + ++ + Q+ LR
Sbjct: 580 KKTEKELRERIAQLQDSNYELSGSSKAQAARMAQMEKQIEALR 622
>06_03_1312 -
29246828-29246899,29247011-29247058,29247138-29247215,
29247304-29247360,29247597-29247662,29247750-29247839,
29248136-29248213,29248318-29248422,29248534-29248669,
29248778-29248853,29248973-29249177,29249289-29249501,
29250073-29250795
Length = 648
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 145 CALRHACGQFRPVWPSSPPRDVFFHH 68
C +R FRPV P PP D F H
Sbjct: 450 CRVRVPFSAFRPVNPQDPPLDPFLVH 475
>06_03_0545 + 21983666-21986086
Length = 806
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 465 RVQVRDLHIFPFNDVFQIELFIFEFTDAFVVIFANPLNSI 346
R+ V + F FND FQ+ LF +E D + + NP +I
Sbjct: 166 RLLVPGRYSFHFNDQFQLSLF-YEENDIPFIYWPNPTRTI 204
>09_06_0296 -
22104796-22104916,22104967-22105022,22105094-22105189,
22106431-22106505,22107339-22107639,22107728-22107798,
22109340-22109468,22109566-22109760,22109916-22110082,
22110175-22110271,22110689-22110697
Length = 438
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -1
Query: 453 RDLHIFPFNDVFQIELFIFE 394
RDLH+F ++Q+++F+F+
Sbjct: 390 RDLHVFASTRIYQLDVFLFK 409
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/61 (21%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 325 NIDDANED-TIKRVCKD-YHERIGKLEDEKFDLEYIVKRKDMEISDLNSQVNDLRGKFVK 498
++ +ED + K + K+ Y E + + ED++F+L+ +++ + I + + ++ +K
Sbjct: 468 SVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVIVAIKRVEELIEKMQDNSIK 527
Query: 499 P 501
P
Sbjct: 528 P 528
>02_01_0558 +
4109929-4110042,4110989-4111097,4111404-4111563,
4111721-4111796,4111984-4112109,4112233-4112484
Length = 278
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 430 KRKDMEISDLNSQVNDLRGK 489
KRK ++DL SQV+ LRG+
Sbjct: 141 KRKQAHLADLESQVDQLRGE 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,011,404
Number of Sequences: 37544
Number of extensions: 199414
Number of successful extensions: 572
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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