Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I03
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    27   2.6  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.6  
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   6.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   7.9  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   7.9  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   7.9  

>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 514 VLEHVVHSGTDSVEVRNLRNIWQVFSGECF-GTEIVVVVMEEIYFTGSRH 368
           +L HV + GT+SV++   R I Q F  +CF      V  + E +F   RH
Sbjct: 111 ILFHVTYDGTESVDL--ARPIIQEFFLKCFLQNNKSVTPVYESFFNQPRH 158


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 463 LRNIWQVFSGECFGT--EIVVVVMEEIYFTGSRHFV 362
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 237

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 407 NHDFSAKAFATKNLPNIPQVPNFNTVGAGVDYMFKDKIGASATAVHTDVF 556
           N DF   +   ++L N   +P   ++G   DY+   K G+ +  V + +F
Sbjct: 171 NPDFQVLSDLRESLQNELGIPLQLSMGMSSDYLLAIKYGSDSVRVGSSIF 220


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 23  YSSYQFFWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGNAGALTVNSD 178
           Y  Y FF +     + ++  + T+L  MR+    GP P   G A  LT++ +
Sbjct: 77  YQWYLFFVAGFGWMSDNIWPVCTSLILMRLDEVDGPHPPAEGRAPYLTLSQN 128


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 7    KMFAKLFLVSVLLVGVNSRYVLVEEPG---YYIEQYEDQPEQWANSRVRRQCGCTHCQLR 177
            K++ + +L++   +GV +  +L  +     +  E+ ED    WA S +     C H +L 
Sbjct: 1203 KLYERYYLITRSFIGVAALQLLFYKKNISEFEREKVEDVAH-WAQSSLSEMAKCFHAELY 1261

Query: 178  RHLRCYGQG 204
            +   C  +G
Sbjct: 1262 KLWVCLLEG 1270


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 320  HGATLTKTHIPGFGDKMTAAGKV 388
            HG T+   HI   GD MT  G+V
Sbjct: 1292 HGLTVDPRHIMLLGDVMTCKGEV 1314


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 305 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 394
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 151 CGCTHCQLRRHLRCYGQGTYNWKR 222
           C    C ++R L C  Q TYN +R
Sbjct: 181 CVKAMCTVQRGLECLSQSTYNVER 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,176
Number of Sequences: 5004
Number of extensions: 53291
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)