Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_I03
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0922 + 20834195-20836603 31 0.87
06_01_1112 - 9157776-9158149,9158248-9161158 30 1.5
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 2.0
05_06_0268 + 26792845-26792891,26793050-26793830 29 2.0
04_03_0916 + 20794240-20794246,20794585-20796545 29 2.0
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 29 2.7
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 29 3.5
08_01_0657 + 5674907-5674993,5675615-5676583 28 4.6
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 28 6.1
06_03_1072 + 27365834-27365945,27366360-27366464,27366844-273669... 28 6.1
06_03_1025 - 26980631-26981286,26981434-26981557,26982290-269824... 28 6.1
04_03_0913 + 20777859-20780309 28 6.1
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 27 8.1
07_01_0713 - 5438005-5438294,5438441-5438567,5438638-5438687,543... 27 8.1
01_03_0230 - 14004159-14004344,14004422-14004514,14004613-140046... 27 8.1
>04_03_0922 + 20834195-20836603
Length = 802
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 406 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 537
QP+ QC P + +EL C+C G ++ +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334
>06_01_1112 - 9157776-9158149,9158248-9161158
Length = 1094
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 101 NMRISRSSGPTPGCAGNAGALTVNSDGTSGAMVKVPIT-GNEN 226
++ ++ +GP P C GN ALT+ S + VP T GN N
Sbjct: 375 DLTTNQLTGPIPACLGNLSALTILSLAENQLDGSVPATIGNMN 417
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 511 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 395
LE + HSG + +V L N W ++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>05_06_0268 + 26792845-26792891,26793050-26793830
Length = 275
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +3
Query: 426 KHSPLKTCQIFLKFRTSTLS---VPEWTTCSRTRLVHLRPPFTP 548
KH ++TC + + + + + +P+W ++ + +PPFTP
Sbjct: 98 KHRAIRTCLLTVAYHSPSSEPSVIPDWDCSKQSTVNPAQPPFTP 141
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 406 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 537
QP+ QC P + +EL +C C G + +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 154 RIAGAPWSWPTAPADPHIVQCSNQALQRARTG 59
R AG PW+W +PA + +C A +R TG
Sbjct: 406 REAGGPWTWRESPASRAMQKC--PACKRTHTG 435
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 41 FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 133
FW ST CS L+ LNN +SR +GP+
Sbjct: 40 FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71
>08_01_0657 + 5674907-5674993,5675615-5676583
Length = 351
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 222 SFPVIGTLTIAPEVPSELTVSAPALPAH 139
+F V T+T+ E+P + +APA PA+
Sbjct: 132 AFTVECTITVITEIPDNVAAAAPAAPAN 159
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.9 bits (59), Expect = 6.1
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +2
Query: 143 AGNAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGH 322
A AG + + G V + G +NH +S +G GA TAG AY+ +N
Sbjct: 175 AFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNS 225
Query: 323 G 325
G
Sbjct: 226 G 226
>06_03_1072 +
27365834-27365945,27366360-27366464,27366844-27366929,
27367445-27367631,27368031-27368142,27368235-27368337,
27368424-27368469,27368670-27368708,27368803-27368959,
27369031-27369133,27369337-27369453,27369880-27369957,
27370044-27370145,27370252-27370345,27370432-27370542,
27370643-27370707,27370949-27371097,27371349-27371581,
27371778-27371908,27372016-27372126,27372210-27372326
Length = 785
Score = 27.9 bits (59), Expect = 6.1
Identities = 8/35 (22%), Positives = 16/35 (45%)
Frame = +1
Query: 88 YYIEQYEDQPEQWANSRVRRQCGCTHCQLRRHLRC 192
Y ++ Y+D+ W + + R C C ++ C
Sbjct: 590 YEVQSYDDRVNTWFSEAIGRPCTLVRCSSSKYRSC 624
>06_03_1025 -
26980631-26981286,26981434-26981557,26982290-26982426,
26983220-26983355,26983615-26983922,26985159-26985207
Length = 469
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +2
Query: 116 RSSGPTPGCAGNAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAG 295
R G T G G SD + A V P E+ ++ G+V++ +L AAT
Sbjct: 11 RLQGKTEA-GGPDGLRKCKSDSKATASVLAPPKDVEDLQIEGYGNVNIFTYNELRAATKN 69
Query: 296 LAYDNVNGHG 325
D + G G
Sbjct: 70 FRPDQILGEG 79
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 406 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 537
QP+ C P +EL HC C G V +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 529 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 425
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>07_01_0713 -
5438005-5438294,5438441-5438567,5438638-5438687,
5439119-5439426,5439581-5439673,5439840-5440197,
5440235-5440267,5440324-5440482,5440734-5440908
Length = 530
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 210 IGTLTIAPEVPSELTVSAPALPAHPGVGP 124
IG +AP +PS+ P LPA GP
Sbjct: 441 IGMPPLAPVLPSDAAAGHPQLPAAAAAGP 469
>01_03_0230 -
14004159-14004344,14004422-14004514,14004613-14004673,
14004761-14004874,14004955-14005206,14005293-14007037
Length = 816
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 189 PEVPSELTVSAPALPAHPGVGPLLRLI--LILFNVVTRLFNEHVPAVDAD 46
PEVP E+TV+ P + VG + + L +F +H PA D +
Sbjct: 382 PEVPMEITVAEPEVQFVASVGSEIEEVPGLEWDGTEPEIFEDHSPAKDPE 431
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,583
Number of Sequences: 37544
Number of extensions: 386616
Number of successful extensions: 1144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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