Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I03
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    31   0.59 
AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical...    30   1.4  
AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    29   3.1  
U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormon...    28   5.5  
AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical...    28   5.5  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 2   TQRCSPSYSSYQFFW-SASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGNAGALTVNSD 178
           +Q  S S SS   +  S+STAG  S  +  +T   +  S SSGPT    G +   TV   
Sbjct: 457 SQSTSLSMSSLSTYTPSSSTAGATSPATQQSTKPTIGTSMSSGPTTVAPGASTESTVLQS 516

Query: 179 GT-SGAMVKVP 208
            T SG  V +P
Sbjct: 517 STPSGTTVTLP 527


>AL117204-13|CAB55128.1|  286|Caenorhabditis elegans Hypothetical
           protein Y116A8C.22 protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 151 CGCTHCQLRRHLRCYGQGTYNWKRKSQAQC 240
           C CT CQ   HL+C G  +  W   SQ QC
Sbjct: 254 CLCTKCQKWVHLKCTGIRSKQW--NSQFQC 281


>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -1

Query: 270 IWLVRSTEPRALSL*FSFPVIGTLTIAP-----EVPSELTVSAPALPAHPGVGPLLRLIL 106
           +W+VRS E R L++ F   V+  +++A      E+  +  ++    P  PG+G   + I+
Sbjct: 169 VWVVRSKESRRLTVYFVISVVVLISMANVMMGCELDIDAVLATLKKPVAPGIGLFAQFII 228

Query: 105 I 103
           +
Sbjct: 229 M 229


>U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 78 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 140 CAGNAGALTVNSDGTSGAMVKVPITGNE 223
           C G    L +N DGT   M+ +P+ G+E
Sbjct: 231 CIGTESNLLINQDGTYIQMMPLPLMGDE 258


>AF039719-12|AAB96758.1|  293|Caenorhabditis elegans Hypothetical
           protein K04F10.7 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 418 QCQSIRH*KPAKYSSSSELQHCRCRSGLHVQGQDWC 525
           QCQ  +    AKY      Q+C+  +  H Q   WC
Sbjct: 25  QCQKCQK-NEAKYGKPGTCQYCKLNAAFHDQKCVWC 59


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 257 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 358
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical
           protein B0284.4 protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
 Frame = +2

Query: 59  AGTCSLKSLVTT----LNNMRISRSSGPTPGCAGNAGALTVNSDGTSGAMVKVPITGNEN 226
           A  C +++ +TT    LN    S        C G    L   +   +  +V++P     N
Sbjct: 317 AVACLIQNAITTVRNSLNQFGASLQENTFTNCIGYYTDLLEKNKTLTDVIVQLPAVSRSN 376

Query: 227 HRLSAL------GSVDLTNQMKLGAATAGLAYDN-VNGHGATLT 337
           H  SA+       ++D+ N          LA  N +NG+G   T
Sbjct: 377 HTTSAIMYSSQRFAIDVQNDRLALEQKGQLALQNMINGNGGNTT 420


>Z99288-10|CAB16552.2|  338|Caenorhabditis elegans Hypothetical
           protein ZK262.11 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 477 LKFGT*GIFGRFLVANALALK-SWLSLWKRFTLP 379
           L+F T GI G F     +  K SW+ LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


>Z81483-7|CAB03964.2|  338|Caenorhabditis elegans Hypothetical
           protein C43D7.6 protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 477 LKFGT*GIFGRFLVANALALK-SWLSLWKRFTLP 379
           L+F T GI G F     +  K SW+ LWK+F  P
Sbjct: 108 LQFVTLGITGIFENRFRIICKFSWVPLWKKFITP 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,327
Number of Sequences: 27780
Number of extensions: 317285
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)