Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I02
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   2.3  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   3.0  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   4.0  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   5.2  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   6.9  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   6.9  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   9.1  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   9.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   9.1  
SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit L3...    25   9.1  

>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 12   ELSGNVVNEGYNFGYMYHNGIPYPVRPNHFHLDH-PEYLGE--LEKIKDYERRLRDGIEN 182
            +LSGN +    NF  + H  + Y       ++D+   Y+ +  LE + DYE+R++   E 
Sbjct: 973  KLSGNPIISTPNF--LTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVLQEL 1030

Query: 183  GYI 191
            GYI
Sbjct: 1031 GYI 1033


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 354 NYNNPSSATPLLVPSALEHYQTALTDPAFYMIWKRVLKMFSLLHQRL 494
           N ++P  +  +  P  L     A T+P    ++++ L++ SL HQRL
Sbjct: 230 NKSSPFGSATVQTP-CLHSVPDAFTNPDVATLYQKFLRLQSLEHQRL 275


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 414 GSVQ-GQMEPITGLR-YWDCYNYVDATKSFLE 325
           G+V+ G +EP  G   Y D   YVD TKS+ E
Sbjct: 15  GNVKIGNVEPAKGNEGYVDNAGYVDCTKSYFE 46


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 125 QILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDVTTKF 12
           Q+ W + V+M+  NW  Y   + ++  + F+ D  T +
Sbjct: 709 QVYWRLGVQMVALNWQTYDTGLQINDAL-FIADPPTGY 745


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 143 YFFKFTQILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDV 24
           Y F   + L  + V+ +R N  W T    +S ++A  +DV
Sbjct: 337 YTFAMLEQLLELSVKTLRQNTCWSTSWEMLSSLLAIDFDV 376


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 237 IDILGRLIEAGVASPNVQYYKDFISSWK 320
           I   G  I AG  +  VQY K+ IS WK
Sbjct: 220 ISCYGCNIPAGFIAYGVQYAKNTISPWK 247


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 27  VVNEGYNFGYMYHNGIPYPVRPNHFHLDHPEYLGELEKIKD 149
           + +EG N+ Y++HN + Y +  +  + D  E L  L K+ D
Sbjct: 50  LTHEGINYIYIHHNDV-YLLALSKMNSDAMEMLVFLRKMAD 89


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 147  DYERRLRDGIENGYIINSTGDHVPIHTPEG 236
            D+ R +  G +N +++   GDH+ I TP G
Sbjct: 1224 DFPRYVNLGGKN-HVLMGKGDHIVIETPGG 1252


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
 Frame = +3

Query: 66  NGIPYPVRPNHFHLDHPEYLGELEKIKDYERRL---RDGIENGYIINSTGDHVPIHTPEG 236
           N +  P  P H  LD  + L  LEK K+  + +    D    G  I S    +  H P  
Sbjct: 410 NELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHT 469

Query: 237 IDI 245
            D+
Sbjct: 470 ADM 472


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 438  KLDQLMLFGSVQGQMEP 388
            KL +L++FGS+ G +EP
Sbjct: 1033 KLGKLLVFGSIFGYLEP 1049


>SPCC16A11.11 |mrpl31||mitochondrial ribosomal protein subunit
           L31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = -1

Query: 510 LPXIQEDVDAIMRTS*ELASRSCRKLDQLMLFGSVQGQMEP 388
           L  + E VD ++RT+ +  ++SC++++  +     + QM P
Sbjct: 35  LRAVDEVVD-VLRTALQEKNQSCKRIESFVANHQPESQMSP 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,020
Number of Sequences: 5004
Number of extensions: 47016
Number of successful extensions: 118
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)