Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I02
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718...    28   4.0  
06_01_0604 - 4358278-4358442,4358835-4358943,4359236-4359331,435...    28   5.3  

>09_02_0317 +
           7186148-7186243,7186406-7186572,7186766-7186878,
           7187059-7187133,7187215-7187328,7187545-7187612,
           7187690-7187773,7187966-7188019,7188104-7188184,
           7188279-7188372,7188501-7188574,7188656-7188766,
           7188976-7189032,7189119-7189223,7189584-7189687,
           7190021-7190186,7190279-7190416
          Length = 566

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = +3

Query: 51  GYMYHNGIPYPVRPNHFHLDHPEYLGELEKIKDYERRLRDGIENG 185
           G +  +G    V+P    ++  +YLG++E ++DY  ++R+ ++ G
Sbjct: 485 GGIQFDGSGTNVKPITLTVEDQDYLGDIELLQDYLEKVRNIVKPG 529


>06_01_0604 -
           4358278-4358442,4358835-4358943,4359236-4359331,
           4359823-4359956,4360639-4360905,4361225-4361310,
           4361409-4361501,4361601-4361696,4361986-4362093,
           4362473-4362493,4363856-4364156
          Length = 491

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 180 NGYIINSTGDHVPIHTPEGIDILGRLIEAGVASPNVQ-YYKD 302
           N   +   G  VP+H P+   IL +   AG   P+VQ +Y D
Sbjct: 449 NFVTVRGAGHEVPLHRPKQALILIKSFLAGSPMPSVQDFYSD 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,546,636
Number of Sequences: 37544
Number of extensions: 282557
Number of successful extensions: 744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)