Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I02
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        33   0.19 
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)                   28   4.1  
SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)                      28   4.1  
SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)                27   7.2  
SB_3593| Best HMM Match : NAD4L (HMM E-Value=2.3)                      27   7.2  
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              27   9.5  
SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11)               27   9.5  
SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   9.5  

>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 207  DHVPIHTPEGIDILGRLIEAGVASPNVQYYKD 302
            D  P+HT EG DI  ++  +G     V++YKD
Sbjct: 1069 DKTPVHTVEGSDITMKVAVSGTPRTEVEWYKD 1100


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 141 IKDYERRLRDGIENGYIINSTGDHVPIHTPEGIDILGRLIEAGVASPNVQYYKDFISSWK 320
           I++  R LR+ I N    N+ G    +   E  DIL  +++  +   ++Q  KD   SW+
Sbjct: 807 IRELNRLLRNEISNAQGPNAAGQKNFLFQ-EVKDILSNVVQRNMVRESLQAKKDAFESWR 865

Query: 321 YVL 329
            V+
Sbjct: 866 QVI 868


>SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1490

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 82  GYGIPL*YMYPKL*PSFTTLPLSSP 8
           GYG+P+ YM  ++ PSF  + L++P
Sbjct: 912 GYGLPMPYMMHQMHPSFHDMGLANP 936


>SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)
          Length = 327

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
 Frame = +3

Query: 9   GELSGNVVNEGYNFGY--MYHN---GIPYPVRPNHFHLDHPEYLGELEKIKDYERRLRDG 173
           G  S  +  +  N G+  ++ N   G  + VR    H+++ E L     +K Y + LRD 
Sbjct: 56  GAPSHTLTTDASNLGWGAVFENDSTGGTWSVREQKHHINYLELLAVFLGLKTYCKDLRDA 115

Query: 174 IENGYIINSTG----DHV-PIHTPEGIDILGRLI 260
                I N+T     +H+   H+PE +++LG+ I
Sbjct: 116 HVRAMIDNTTAIAVLNHMGTSHSPE-LNLLGKTI 148


>SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)
          Length = 283

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 290 LNIRRSNTGFDKTAKNIDALRSMNGNMITSAVNDITIF 177
           L++   NTG  KTA+++   RS  G    S V D ++F
Sbjct: 242 LSLAAPNTGMSKTARSVRIQRSARGWSRLSVVPDESVF 279


>SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/66 (24%), Positives = 34/66 (51%)
 Frame = +1

Query: 34  TKATILDTCIITVYHIQLDLIISTSIIQSIWVNLKK*RITKDVYVMELKMVISLTALVIM 213
           T AT++   ++TV  + L  ++  ++I  + V L    + K V VM + +V  +   V+M
Sbjct: 8   TLATVMMVTLVTVIMVTLVTVMMVTLITVMMVTLVMVIMVKLVTVMMVTLVTVVMVTVMM 67

Query: 214 FPFILL 231
              +++
Sbjct: 68  VTLVMV 73


>SB_38153| Best HMM Match : DUF590 (HMM E-Value=2.7e-11)
          Length = 733

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
 Frame = +3

Query: 117 EYLGELEKIKDYERRLR-DGIENGYIINSTGDHVPIHTPEGIDILGRLIEAGVASPNVQY 293
           +YLG   KI DY RR+R  G+     ++S+G +       G+++L R+  A V+      
Sbjct: 97  KYLGSGNKIADYNRRMRPQGVVTS--VDSSGCNT---ASPGMEMLLRVF-ALVSG----- 145

Query: 294 YKDFISSWKYVLGNSLWRQHNYNNPSSATPLLV--PSALEHY 413
            + F  + K+VL + LW     + PS    +++  P   E Y
Sbjct: 146 -RGFKKAGKFVLSSKLWES---STPSKTCDVIITFPKDTEDY 183


>SB_3593| Best HMM Match : NAD4L (HMM E-Value=2.3)
          Length = 277

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = +1

Query: 16  LVVTS*TKATILDTCIITVYHIQLDLIISTSIIQSIW-VNLKK*RITKDVYVMELKMVIS 192
           ++V   T   I+   IIT   I + LII+T+ I  ++ +      I   +    + +V+ 
Sbjct: 23  MIVLFITITAIMIVLIITTTGIMIVLIITTTAIMIVFIITTTAIMIVLIITTTAIMIVLI 82

Query: 193 LTALVIMFPFILLRASIFXXXXXXXXXXXXMFNTTKT 303
           +T   IM    +   +I             +F TT T
Sbjct: 83  ITTTAIMIVLFITTTAIMIALIITITTIVIVFITTTT 119


>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2022

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 240 RCPQEYEWEHDHQCC 196
           R P+E  W+ DH CC
Sbjct: 566 RQPEEEPWQSDHSCC 580


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 327 LGNSLWRQHNYNNPSSA-TPLLVPSALEHYQTALTDPAFY 443
           LGNSL R + Y NP S   P   P +  HY +    P +Y
Sbjct: 176 LGNSLSRYYPYGNPQSRYYPSGNPQS-RHYPSGNPQPRYY 214


>SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11)
          Length = 541

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +3

Query: 84  VRPNHFHLDHPEYLGELEKIKDYERRLRDGIENGYIINSTG----DHV-PIHTPEGIDIL 248
           VR    H+++ E L     +K Y + LRD      I N+T     +H+   H+PE +++L
Sbjct: 104 VREQKHHINYLELLAVFLGLKTYCKDLRDAHVRAMIDNTTAIAVLNHMGTSHSPE-LNLL 162

Query: 249 GRLI 260
           G+ I
Sbjct: 163 GKTI 166


>SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 551

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +3

Query: 72  IPYPVRPNHFHLDHPEYLGELEKIKDYERRLRDGIENGYIINSTGDHVPIHTPEGIDILG 251
           +P     N    DH +++ ELE +K  E         GY+  S  + + I      D+LG
Sbjct: 361 LPLAFTENATEDDHKDFMAELELMKSLEHHANVIALYGYVTESEPEMMIIEFVAHGDLLG 420

Query: 252 RL 257
            L
Sbjct: 421 YL 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,715,632
Number of Sequences: 59808
Number of extensions: 331030
Number of successful extensions: 833
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)