Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I02
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical...    28   3.6  
AF022970-1|AAB69895.1|  142|Caenorhabditis elegans Hypothetical ...    28   3.6  
AF016678-7|AAB66154.3|  340|Caenorhabditis elegans Serpentine re...    28   3.6  
Z99278-8|CAE18037.1|  133|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical
           protein Y39A1A.16 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 186 NHFQFHHVDVFRNPLFFQ 133
           NHF++H +D F  PLF+Q
Sbjct: 70  NHFEYH-IDKFHQPLFYQ 86


>AF022970-1|AAB69895.1|  142|Caenorhabditis elegans Hypothetical
           protein F13A2.1 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 57  MYHNGIPYPVRPNHFHL-DHPEYLGELEKIKDYERRLRDGIEN 182
           M  NG P+P    HFH+ D  + L ELE  +D E R +   +N
Sbjct: 29  MVLNGTPFPDILRHFHVSDFSKELAELEIKQDAEFRKKSLWQN 71


>AF016678-7|AAB66154.3|  340|Caenorhabditis elegans Serpentine
           receptor, class i protein45 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 54  YMYHNGIPYPVRPNHFHLDHPEYLGELEKIKDY 152
           + YH GI   + P   +L +PE+  E   +K++
Sbjct: 165 FWYHAGIAEDLLPGFVNLTYPEFKAEFSNLKNF 197


>Z99278-8|CAE18037.1|  133|Caenorhabditis elegans Hypothetical
           protein Y53C12B.7 protein.
          Length = 133

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 6   IGELSGNVVNEGYNFGYMYHNGIPYPVRPNHFH 104
           IG   G  +    +  ++  NG+P P+ P H H
Sbjct: 56  IGSFRGQPIKTRQHHAFIDDNGVPIPLLPYHEH 88


>Z75546-8|CAC42331.2|  640|Caenorhabditis elegans Hypothetical
           protein R05D11.9 protein.
          Length = 640

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 342 WRQHNYNNPSSATPLLVPSALEHYQTALTDPAFY-MIWKRVLKMFS 476
           WR HN +NPS   P     A ++ Q    +  FY +I  ++LK FS
Sbjct: 286 WRYHNMSNPSDFAP-----AAKYRQFFEKNVEFYEVILGKILKRFS 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,033
Number of Sequences: 27780
Number of extensions: 255242
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)