Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_I01
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   1.7  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   3.0  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   4.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   4.0  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   4.0  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   4.0  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    24   5.3  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   7.0  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    24   7.0  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    23   9.2  

>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 187 PSLQWPRPRLWLKENNH 237
           PS++W  PR WLK   +
Sbjct: 192 PSVKWRMPRFWLKRRTN 208


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 74  CRLRLRYGDRFGGAVESLLGIGESWPENERRSHK 175
           C LRL+      G +E LL   +S  E +  SHK
Sbjct: 308 CSLRLKELQNSNGELEKLLEAAQSSFEEQLESHK 341


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 272 YKHEKIHKKVNE*LFSFSQSRGLGHCS 192
           Y H K  KKV E L + + SR +  CS
Sbjct: 214 YFHSKAEKKVTEFLRNRNWSRSITECS 240


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 274 YINMRKYIKKLMNDYF 227
           ++N+R YI+K MN+ F
Sbjct: 373 FLNLRSYIRKSMNNVF 388


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 158 HSLANFLQFLEGIPRRRRN-GPHSEDASDNQQNNF 57
           HS A+  +  E + RRR N G HS   SD+  N F
Sbjct: 470 HSEASISKDYEILKRRRSNSGVHSLTRSDSSFNGF 504


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 224 FSQSRGLGHCSDGWTST 174
           F  +  L HCSDGW  T
Sbjct: 333 FRHAHVLVHCSDGWDRT 349


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 5   YCNVF-FLRFINIKHEFH*NYFVGCRLRLRYGDRFGGAVESLL 130
           +C +F  + F+N ++E   ++  G    +++G  FGGA  + L
Sbjct: 268 FCKLFNSVDFLNFEYEGDLSFSYGMGNSVKWGSIFGGAYANSL 310


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +2

Query: 233 IIH*LFYVFSHVYIITFFVSYIHIILDSY 319
           II   F+ FS   +I FFVSY +II DSY
Sbjct: 448 IIASAFFGFS--LLIVFFVSYNYII-DSY 473


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 98  PHSEDASDNQQNNFSEIHV 42
           P+S + SDN+QNN   + V
Sbjct: 365 PNSHNTSDNEQNNEDYVSV 383


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 89  RYGDRFGGAVESLLGIGESWPENERRSHKCWSSRRY 196
           RYG  +G  V +L   GES P       +C S+  Y
Sbjct: 133 RYGWNYGSIVINLRDSGESLPPLFFHDDECISTIEY 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,345
Number of Sequences: 5004
Number of extensions: 24858
Number of successful extensions: 58
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)