Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H24
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    25   1.8  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   1.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    23   4.1  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    23   5.4  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    23   7.1  
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces...    23   7.1  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    22   9.4  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    22   9.4  

>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 69  IRETHSQFFKSLQERGYSL 125
           +R  HS+ ++ L+ RGYSL
Sbjct: 100 LRTDHSKLWERLESRGYSL 118


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 227 RILPPTVKI*LSSYMKYSPYLDSTRFRIIGKLERQAITALL 105
           RIL       L +Y  YSP   ST + +   L   +IT+++
Sbjct: 387 RILTKDATFDLDAYQNYSPIFMSTTYALAFGLSFASITSVI 427


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -3

Query: 224 ILPPTVKI*LSSYMKYSPYLDSTRFR 147
           +LP   +   ++++++SPY + T FR
Sbjct: 460 VLPKLAEFRNNNFVRFSPYANITSFR 485


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 51  LVDNLNIRETHSQFFKSLQERGYSLTFKL 137
           L ++ N    +  F+KSLQ  G ++T+++
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRM 442


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 66  NIRETHSQFFKSLQERGYS 122
           N  ET+S+   SLQ RG S
Sbjct: 47  NTNETYSKMDNSLQHRGVS 65


>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 218 PPTVKI*LSSYMKYSPYLDS 159
           PPTV    S ++ YSP L++
Sbjct: 10  PPTVNDLFSDFVSYSPRLNN 29


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 15  LSLSLADQKTLVLVDNLNIRETHSQFFKSLQERGYSLTF 131
           LSL+ AD+  ++ V +L     H  F K      YSL+F
Sbjct: 542 LSLASADESGIIKVWDLRSSNQHVSFVKH-SSIVYSLSF 579


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 227 RILPPTVKI*LSSYMKYSPYLDST 156
           R+LP +V+  LSS   +  YLD T
Sbjct: 58  RVLPISVRRILSSRKTFVNYLDET 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 957,573
Number of Sequences: 5004
Number of extensions: 15115
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)