Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H24
         (238 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591...    52   7e-08
03_05_0627 - 26240673-26241318,26241713-26242536                       26   4.9  
08_02_0116 + 12762009-12763021,12763421-12763436                       25   6.5  
01_01_0418 - 3142659-3145622                                           25   6.5  
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987...    25   8.6  

>07_01_0771 +
           5917550-5917829,5918390-5918526,5918617-5918742,
           5919168-5919221,5919344-5919457,5919895-5919950,
           5920017-5920058,5920580-5920655,5920765-5920836,
           5920908-5921033,5921117-5921221,5921333-5921416,
           5921636-5921683
          Length = 439

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = +3

Query: 36  QKTLVLVDNLNIRETHSQFFKSLQERGYSLTFKLADDAK 152
           ++ LVLVD+L +R +HS FF SLQ RG+ L F+LADD K
Sbjct: 33  RRVLVLVDDLAVRSSHSAFFASLQGRGFDLDFRLADDPK 71


>03_05_0627 - 26240673-26241318,26241713-26242536
          Length = 489

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 179 YSPYLDSTRFRIIGKLERQAITALLQRFKELRMSLPY 69
           Y+ +L S++F  +GKL   ++  +     ++ +S PY
Sbjct: 430 YAYHLSSSKFEELGKLHPVSLHGIPNEHLDVELSFPY 466


>08_02_0116 + 12762009-12763021,12763421-12763436
          Length = 342

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 94  LNLCKSAVIA*RSSLPMMRNLVLSKYGEY 180
           LN  K  + A  S LP  RN++   +GEY
Sbjct: 212 LNCLKDKIFA-HSDLPCSRNVIFHIFGEY 239


>01_01_0418 - 3142659-3145622
          Length = 987

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 21  LSLADQKTLVLVDNLNIRETHSQFFKSLQERGYSLTF 131
           +  +   TL++    N+  T  QF  S+  +GY +TF
Sbjct: 768 METSSSATLLMQYQHNVHSTTYQFSTSIAYKGYEVTF 804


>09_04_0260 -
           16197522-16197669,16198027-16198130,16198508-16198719,
           16198795-16198900,16199006-16199119,16199200-16199417,
           16199837-16199900,16199982-16200335,16200609-16200767,
           16201486-16202907
          Length = 966

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 103 CKSAVIA*RSSLPMMRNLVLSKYGEYFI*E 192
           C  + +  R  +  +RNL LSKY E FI E
Sbjct: 485 CGESNVEKRRVMEWLRNLGLSKYEEIFIKE 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,850,670
Number of Sequences: 37544
Number of extensions: 85584
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)