Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H24
         (238 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...    43   3e-05
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 20/43 (46%), Positives = 31/43 (72%)
 Frame = +3

Query: 24  SLADQKTLVLVDNLNIRETHSQFFKSLQERGYSLTFKLADDAK 152
           SLAD + LVL +   +++THS F  S++ERG+ LT + ADD++
Sbjct: 18  SLAD-RVLVLGETAAVKDTHSVFLNSVKERGHELTVRAADDSQ 59


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 195 KFLYEIFPIFRQHQVSHHR 139
           +F  E  P+F+QHQ   HR
Sbjct: 40  EFRVEACPLFKQHQCQQHR 58


>Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical
           protein C50B6.10 protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 171 WGIFHIRT*SYFHRRW 218
           W IFH+R  S+F+  W
Sbjct: 118 WAIFHVRRLSFFNGIW 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,182,538
Number of Sequences: 27780
Number of extensions: 81608
Number of successful extensions: 178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)