Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H24
         (238 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   0.89 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   1.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   3.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   4.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   4.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 0.89
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 119 ITALLQRFKELRMSLPY 69
           +TALL++ +E+ + +PY
Sbjct: 332 LTALLRKMQEMSIEVPY 348


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 1.5
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 146 CETWCCLNMG 175
           C  WCC N+G
Sbjct: 11  CCCWCCDNLG 20


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 3.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 204 NMIKFLYEIFPIFRQHQVSHHRQ 136
           N+ K +Y      R H+  +HRQ
Sbjct: 36  NICKRVYSSLNSLRNHKSIYHRQ 58


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 237 ICPPHSTTDGENMIKF 190
           +CP  + TDGE    F
Sbjct: 442 LCPHFNVTDGETTKTF 457


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 174 PIFRQHQVSHHRQ 136
           PI++ H   HH Q
Sbjct: 68  PIYQSHHHLHHHQ 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,658
Number of Sequences: 438
Number of extensions: 933
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  3898467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)