Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0004_H23
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc... 30 0.20
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 29 0.47
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 27 1.4
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 1.9
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 1.9
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 26 2.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 2.5
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 3.3
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 3.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 4.4
SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1 |Schiz... 25 4.4
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 25 5.8
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 25 7.7
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 7.7
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 7.7
>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
precursor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 407
Score = 29.9 bits (64), Expect = 0.20
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Frame = +2
Query: 5 TLPANEWTDVHIARFGHSVSLKINLV---HSYEQWXXXXXXXXXXXXPMFVGGVDDSIVL 175
T+ + + D+ I +G NLV H Y+ + V + DSI
Sbjct: 244 TIIHDAYVDLSIWDYGVVSPSSYNLVMDVHRYQLYESDECSKTLDDHLSDVCSIGDSIAS 303
Query: 176 NNNTGVTGGFSGCIKDVMIYENAVD 250
+ VTG +SG + D I+E VD
Sbjct: 304 SPYITVTGEWSGTLADCTIFEEGVD 328
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 28.7 bits (61), Expect = 0.47
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 301 IIAALLYISRLDRRIDNV--HCIFINHNILDASTESACHAC 185
++ L+Y ++++R D I +N+ +DA TES C C
Sbjct: 236 LVDVLIYDGKVEKRSDGASYRAIRVNNENIDAFTESPCGNC 276
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 207 VDASRML*FMKMQWTLSILRSSLLMYRSAAIMTEGIYLRLKG 332
+ ASRML F+ W++++L S + I T I L+G
Sbjct: 123 IKASRMLAFISFAWSMTVLFSGFMSSYGGLIATRLILGLLEG 164
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 303 SLLLHSCTLADWIEELTMSTAFS*IITSLMHPLNPPVTP 187
SL H+ T ++ I EL + S + T L+H L+ P TP
Sbjct: 175 SLNSHNLTPSNVIRELPIVIHNSHLATCLLHSLSEPPTP 213
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -2
Query: 359 RNLRCGI--GMSLQPQVYPLCHYCCTPVH*QTGSKN*QCP 246
R L C I GM P V P H C P Q +++ QCP
Sbjct: 165 RELECQICFGMLYDPVVSPCGHTFCGPCLMQALTQSPQCP 204
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 2.5
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = -1
Query: 336 HVPSASGISPLSLLLHSCTLADWIEELTMSTAFS*IITSLMHPLNPPVTPVLLFNTIESS 157
H+P + +S L + + ++ + + +FS + TS + P+N T T E
Sbjct: 184 HIPEGTALSQRETLPNMGSAQ--MKSQSRTPSFSNVTTSPVPPINSNATA----QTAEGH 237
Query: 156 TPPTNMGVSNL-RSSVRPSNHCS 91
TNM V N+ + S+ P+ + S
Sbjct: 238 MGATNMTVDNMNKPSIPPNGNTS 260
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 2.5
Identities = 23/109 (21%), Positives = 43/109 (39%)
Frame = -1
Query: 426 TRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMS 247
T + P+ S ++ I L ++S + S + S T+ + +T S
Sbjct: 1852 TALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSS 1911
Query: 246 TAFS*IITSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSNLRSSVRPSN 100
TA + + TP+ + + SSTP T+ V N + + S+
Sbjct: 1912 TALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSS 1960
Score = 26.2 bits (55), Expect = 2.5
Identities = 23/109 (21%), Positives = 43/109 (39%)
Frame = -1
Query: 426 TRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMS 247
T + P+ S ++ I L ++S + S + S T+ + +T S
Sbjct: 2044 TALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPITSS 2103
Query: 246 TAFS*IITSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSNLRSSVRPSN 100
TA + + TP+ + + SSTP T+ V N + + S+
Sbjct: 2104 TALNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSS 2152
Score = 25.8 bits (54), Expect = 3.3
Identities = 21/109 (19%), Positives = 43/109 (39%)
Frame = -1
Query: 426 TRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMS 247
T + P+ S ++ I L ++S + S + S T+ + +T S
Sbjct: 508 TALNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSS 567
Query: 246 TAFS*IITSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSNLRSSVRPSN 100
+ + + TP+ ++ + SSTP T+ V N + + S+
Sbjct: 568 SVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSSTPITSSS 616
Score = 25.8 bits (54), Expect = 3.3
Identities = 22/108 (20%), Positives = 43/108 (39%)
Frame = -1
Query: 426 TRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMS 247
T + P+ S ++ I L ++S + S + S T+ + +T S
Sbjct: 916 TALNTSTPITSSSVLNSSTPITSSTGLNTSTPITSSSVLNSSTPITSSTVLNSSTPITSS 975
Query: 246 TAFS*IITSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSNLRSSVRPS 103
TA + + TP+ + + +STP T+ V N +++ S
Sbjct: 976 TALNTSTPITSSSVLNSSTPITSSSVLNTSTPITSSSVLNSSTAITSS 1023
Score = 25.0 bits (52), Expect = 5.8
Identities = 23/101 (22%), Positives = 40/101 (39%)
Frame = -1
Query: 405 PVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMSTAFS*II 226
P+ S ++ I L ++S I S + S T+ + +T STA +
Sbjct: 395 PITSSSILNTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTALNTST 454
Query: 225 TSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSNLRSSVRPS 103
+ TP+ + + SSTP T+ V N + + S
Sbjct: 455 PITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSS 495
Score = 25.0 bits (52), Expect = 5.8
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Frame = -1
Query: 405 PVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMSTAF--S* 232
P+ S ++ I L ++S + S + S T+ + +T ST S
Sbjct: 2507 PITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSST 2566
Query: 231 IITSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSNLRSSVRPS 103
ITSL LN TP+ + + SSTP T+ V N + + S
Sbjct: 2567 PITSLT-ALNSS-TPITSSSVLNSSTPITSSTVVNTSTPITSS 2607
Score = 24.6 bits (51), Expect = 7.7
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = -1
Query: 405 PVNPSGQMHDMLSIAQEPPLRHWHVPSASGISPLSLLLHSCTLADWIEELTMSTAF--S* 232
P+ S ++ +I L ++S + S + S T+ + +T ST S
Sbjct: 1007 PITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSST 1066
Query: 231 IITSLMHPLNPPVTPVLLFNTIESSTPPTNMGVSNLRSSVRPSN 100
ITS LN TP+ + + SSTP T+ V N + + S+
Sbjct: 1067 PITSST-ALNTS-TPITSSSVLNSSTPITSSTVLNSSTPITSSS 1108
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +2
Query: 158 DDSIVLNNNTGVTGGFSGCIKDVMIYENAVDIVNSSIQSANVQECSNND 304
+DS LN+ +TG + ++ + +VDI +++++ AN Q+ + D
Sbjct: 441 EDSKDLNDTNSITGSSPTEESNALVEDTSVDI-SATLEEANTQQENAED 488
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 251 IVNSSIQSANVQECSNNDRGDIP 319
+ NSS+ SA+VQE ++N G P
Sbjct: 341 LTNSSVASADVQERTHNTNGASP 363
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 4.4
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Frame = -1
Query: 327 SASGISPLSLLLHSCTLADWIEELTMSTAFS*IITSLMHPLNP-----PVTPVLLFNTIE 163
+ S SPL SCT + I S++ S IT + P + P+ P +T
Sbjct: 101 TGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDT 160
Query: 162 SSTP-PTNMGVSNLRSSVRPSNHCS*LCT 79
+S P PT +S+ P+ S L T
Sbjct: 161 NSNPLPTTSTSCTTSTSIPPTGGSSSLST 189
>SPAC2G11.15c |tgs1|SPAC521.01c|RNA methyltransferase Tgs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 100 PLLIAMYKVNLERYGVAKAR 41
P+ IAM K NLE YG+ +R
Sbjct: 103 PIKIAMAKHNLEIYGIPSSR 122
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -1
Query: 438 NGFGTRFSQYVPVNPSGQMHDMLSIAQEPPLRHWHVPSAS 319
NG+ ++YV N M+ +AQ+ H H P S
Sbjct: 37 NGYFQDSNEYVEPNIPAVYGSMIPVAQQLQQHHVHTPGES 76
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 7.7
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 180 LFNTIESSTPPTNMGVSNLRSSVRPSNHCS 91
LFNT ES+TPP + G +L S NH S
Sbjct: 63 LFNTDESTTPP-DYGEDSL-SITHRENHSS 90
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 7.7
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 180 LFNTIESSTPPTNMGVSNLRSSVRPSNHCS 91
LFNT ES+TPP + G +L S NH S
Sbjct: 63 LFNTDESTTPP-DYGEDSL-SITHRENHSS 90
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 24.6 bits (51), Expect = 7.7
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = -1
Query: 264 EELTMSTAFS*I-ITSL--MHPLNPPVTPVLLFNTIESSTPPT---NMGVSNLRSSVRPS 103
E LT+ST I I L + ++P T LL SS+ P N G SNL +RPS
Sbjct: 102 EALTISTPVDPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNAGHSNLDHPIRPS 161
Query: 102 NHCS*LCTRLI 70
S R+I
Sbjct: 162 LQSSISSNRII 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,720
Number of Sequences: 5004
Number of extensions: 42452
Number of successful extensions: 316
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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