Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H23
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429     30   0.82 
01_06_1753 - 39664219-39665445                                         29   1.9  
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603     28   3.3  
05_05_0236 - 23517512-23517682,23519436-23519516,23519685-235198...    27   5.8  
02_01_0011 + 78277-78487,78594-79417                                   27   5.8  
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412...    27   5.8  
11_06_0745 + 26857968-26859955,26860697-26860712                       27   7.6  

>09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429
          Length = 541

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = -1

Query: 306 LSLLLHSCTLADWIEELTMSTAFS*IITSLMHPLNPPVTPV-------LLFNTIESSTPP 148
           +S +LHSC + D I +L  S +      ++M  +    +P        L  N +E+ST  
Sbjct: 398 VSGMLHSCRVHDMIHDLIRSLSSKENFVTVMDGILQQTSPASKVRRLSLQNNKLENSTAQ 457

Query: 147 TNMGVSNLRS 118
           TN+ +S +RS
Sbjct: 458 TNLKMSQVRS 467


>01_06_1753 - 39664219-39665445
          Length = 408

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 221 DVMIYENAVDIVNSSIQSANVQECSNNDRGDIPEAEGTCQCRNGGSCA 364
           ++ ++ENAV  ++SS +   V E      GD+        CRNGG+ A
Sbjct: 46  EMSVHENAVQKMSSSFREEKVYEQQGGAGGDVQ------VCRNGGAAA 87


>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
          Length = 1132

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 177 FNTIESSTPPTNMGVSNLRS 118
           F  +E +TPPTNM +S +R+
Sbjct: 542 FGNVEDATPPTNMRLSQVRT 561


>05_05_0236 -
           23517512-23517682,23519436-23519516,23519685-23519891,
           23519987-23520164,23520250-23520284,23520725-23520826,
           23520908-23520964,23521236-23521325
          Length = 306

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 149 GGVDDSIVLNNNTGVTGGFSG 211
           GG  DS+ + N TG++GG+ G
Sbjct: 179 GGEFDSVYIGNRTGLSGGWRG 199


>02_01_0011 + 78277-78487,78594-79417
          Length = 344

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 401 TGTYCENRVPNPLITSRIGYSD 466
           TG +C  R+P   I SR+G  +
Sbjct: 57  TGRFCNGRIPTDFIASRLGLKE 78


>01_01_0562 +
           4126368-4128196,4128517-4128715,4128827-4128886,
           4129129-4129233,4129987-4130127,4130223-4130285,
           4130925-4131152,4131250-4131333,4132000-4132157,
           4132252-4132777,4133641-4133700,4133904-4134026,
           4134906-4135181,4135282-4135347,4135500-4135631,
           4135977-4136798,4137026-4137306,4137564-4137796,
           4138022-4138260,4138367-4138558,4138808-4139080,
           4139186-4139332
          Length = 2078

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 345 RHWHVPSASGISPLSLLLHSCTLADWIEELT 253
           R  H+     +SPL + LH+C++    EE +
Sbjct: 153 REVHLGRVRSVSPLGITLHTCSIGPHAEEFS 183


>11_06_0745 + 26857968-26859955,26860697-26860712
          Length = 667

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 177 FNTIESSTPPTNMGVSNLRS 118
           F  IE +TPPTN+ +S +R+
Sbjct: 211 FGNIEDATPPTNIRLSQVRT 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,897,290
Number of Sequences: 37544
Number of extensions: 294684
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)