Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H20
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    28   0.43 
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   1.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   2.3  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   3.0  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    24   5.3  
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    24   7.0  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    23   9.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   9.2  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 113 CYKVFDQGYQWPLVVCVLLHC 51
           CY  FD  Y +   + VLLHC
Sbjct: 585 CYSFFDYNYTFSSALVVLLHC 605


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 14  RCGVNNGHLDSDYNVVGHRQLMATDSPGRKLYNIIRRW 127
           + GV   +LD D  ++ H+Q   T    R   + +  W
Sbjct: 168 KLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSW 205


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 255 NILWHIKFCITINIHHPSSIHHLQIE**PYYS 160
           NI    K+CI  N+  PS++ H + E   YYS
Sbjct: 440 NICTFAKWCINNNLDEPSNLKHFR-EMLDYYS 470


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 237 KFCITINIHHPSSIHHLQI 181
           +FCI+ ++ HP+ IH L +
Sbjct: 405 EFCISSSLRHPNVIHTLDL 423


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 172 TILLFIAVNIFEPFGPPSD 116
           +I+   AVN+F P  PPS+
Sbjct: 173 SIVHMFAVNVFRPLPPPSN 191


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 110 YKVFDQGYQWPLVVCVLLHCSQNLNDRCSHR 18
           Y V D GY+W L     L+ +Q      +HR
Sbjct: 197 YGVLDSGYRWDLSKQEALYLAQRSIVAATHR 227


>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 168  YYSL*LSTFSSHSGHLLIML*SFRPGLSVAISC 70
            YY L L + S  S H+L+ L  FR   S+ + C
Sbjct: 966  YYKLELLSSSEASNHMLLSLSVFR--FSLTLDC 996


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 5   SLLRCGVNNGHLDSDYNVVGHR 70
           S +RC   N   D+ Y+ +GH+
Sbjct: 344 STIRCNDCNSRCDTKYHFLGHK 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,911
Number of Sequences: 5004
Number of extensions: 23750
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)