Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_H20
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0136 + 5719136-5719780,5719923-5720237                           27   2.8  
06_03_0846 - 25328224-25330613,25330716-25330794                       27   2.8  
02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579     26   8.5  

>10_02_0136 + 5719136-5719780,5719923-5720237
          Length = 319

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 154 AVNIFEPFGPPSDYVIKFSTRAISGH 77
           AV+I EPFG    YV  ++ R + GH
Sbjct: 152 AVDIPEPFGRRPAYVSNWAMRCVDGH 177


>06_03_0846 - 25328224-25330613,25330716-25330794
          Length = 822

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 113 IIRRWPEWLENVDSYKE 163
           II+RW  W   VD++KE
Sbjct: 640 IIQRWMRWFSEVDNFKE 656


>02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579
          Length = 339

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 92  PGRKLYNIIRRWPEWLENVDSYK 160
           PG +LY +    PE+  N+ SYK
Sbjct: 287 PGTRLYKVREIAPEYYNNLKSYK 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,773,595
Number of Sequences: 37544
Number of extensions: 135923
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)